Fix bug in handling starttime and endtime

cxx/src/lib/io/fileio.cc

@@ -142,9 +142,18 @@ std::vector<long int> fwrite_to_file(
 		fseek(fp,0L,2);
 
 		for (int i = 0; i < d.member.size(); ++i) {
+<<<<<<< HEAD
+			/* Silenetly skip dead data */
+			if(d.member[i].dead()) continue;
+			long int foff = ftell(fp);
+			foffs.push_back(foff);
+			TimeSeries& t = d.member[i];
+			if (fwrite((void *)t.s.data(), sizeof(double), t.npts(), fp) != t.npts())
+=======
 			if(d.member[i].dead())
 			    foffs.push_back(-1);
 			else
+>>>>>>> dac6e7f1729a67e87eaa44658263e18e705488aa
 			{
 				long int foff = ftell(fp);
 				foffs.push_back(foff);
@@ -207,9 +216,18 @@ std::vector<long int> fwrite_to_file(mspass::seismic::LoggingEnsemble<mspass::se
 		fseek(fp,0L,2);
 
 		for (int i = 0; i < d.member.size(); ++i) {
+<<<<<<< HEAD
+			/* Silently skip dead data */
+			if(d.member[i].dead()) continue;
+			long int foff = ftell(fp);
+			foffs.push_back(foff);
+			Seismogram& t = d.member[i];
+			if (fwrite((void *)t.u.get_address(0,0), sizeof(double), 3*t.npts(), fp) != 3*t.npts())
+=======
 			if(d.member[i].dead())
 			    foffs.push_back(-1);
 			else
+>>>>>>> dac6e7f1729a67e87eaa44658263e18e705488aa
 			{
 				if(d.member[i].dead()) continue;
 				long int foff = ftell(fp);

data/yaml/mspass.yaml

@@ -66,6 +66,10 @@ Database:
           concept:  Time shift applied to define relative time of 0.0
           aliases:  t0shift
           constraint: required
+        endtime:
+          type: double
+          concept: Time of last sample of data (epoch time or relative to some other time mark)
+          constraint: optional 
         utc_convertible:
           type:  bool
           concept:  When true starttime_shift can be used to convert relative time to UTC.

data/yaml/mspass_fdsn.yaml

@@ -62,6 +62,10 @@ Database:
           concept:  Time shift applied to define relative time of 0.0
           aliases:  t0shift
           constraint: required
+        endtime:
+          type: double
+          concept: Time of last sample of data (epoch time or relative to some other time mark)
+          constraint: optional
         utc_convertible:
           type:  bool
           concept:  When true starttime_shift can be used to convert relative time to UTC.

data/yaml/mspass_lite.yaml

@@ -37,6 +37,10 @@ Database:
           concept:  Time shift applied to define relative time of 0.0
           aliases:  t0shift
           constraint: required
+        endtime:
+          type: double
+          concept: Time of last sample of data (epoch time or relative to some other time mark)
+          constraint: optional
         utc_convertible:
           type:  bool
           concept:  When true starttime_shift can be used to convert relative time to UTC.
@@ -283,4 +287,5 @@ Metadata:
         readonly: false
       loc:
         collection: wf_Seismogram
-        readonly: false 
+        readonly: false
+

data/yaml/mspass_s3.yaml

@@ -62,6 +62,10 @@ Database:
           concept:  Time shift applied to define relative time of 0.0
           aliases:  t0shift
           constraint: required
+        endtime:
+          type: double
+          concept: Time of last sample of data (epoch time or relative to some other time mark)
+          constraint: optional
         utc_convertible:
           type:  bool
           concept:  When true starttime_shift can be used to convert relative time to UTC.

python/mspasspy/db/database.py

@@ -6508,6 +6508,9 @@ def _atomic_save_all_documents(
         # add tag - intentionally not set in mspass_object returned
         if data_tag:
             insertion_dict["data_tag"] = data_tag
+        # Always set starttime and endtime 
+        insertion_dict["starttime"] = mspass_object.t0
+        insertion_dict["endtime"] = mspass_object.endtime()
         else:
             # We need to clear data tag if was previously defined in
             # this case or a the old tag will be saved with this datum