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Releases: mtisza1/influenza_a_serotype

iav_serotype, v0.1.4

24 Jun 15:30
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Changes from v0.1.3 to v0.1.4:

  1. Added test data suite in test_data/ with 10,000 forward and reverse reads from SRR28752446. Key outputs also included.
  2. Changed --thresh flag from type "int" to type "float".

iav_serotype, v0.1.3

11 Jun 14:59
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Updates from v0.1.2 to v0.1.3:

  1. Adding -f 100000 to minimap command to allow alignment to high-frequency sequences (minimizers) in the influenza A database.

  2. Rotating x-axis labels in ggplot

iav_serotype, v0.1.2

06 Jun 20:23
8ed015b
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Mainly, changing filtering out alignments below (ANI*AF) threshold instead of recording them as ambiguous. This is how it should have been set, originally.

Database version v1.25 is being release simultaneously. See database notes.

iav_serotype, v0.1.1

06 May 22:30
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Initial release of iav_serotype.

Functionality/database for Influenza A.

Permits short paired-end reads or long reads.

Database version at time of release: v1.1