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Use graph config file.
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jimmymathews committed Jan 10, 2024
1 parent 9065245 commit 8786a38
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Showing 3 changed files with 8 additions and 1 deletion.
1 change: 1 addition & 0 deletions build/build_scripts/.graph.config
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[general]
db_config_file_path = build/db/.spt_db.config.local
study_name = Melanoma intralesional IL2

[upload-importances]
cohort_stratifier = None
6 changes: 6 additions & 0 deletions build/build_scripts/.graph.config2
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[general]
db_config_file_path = build/db/.spt_db.config.local
study_name = Breast cancer IMC

[upload-importances]
cohort_stratifier = None
2 changes: 1 addition & 1 deletion build/build_scripts/import_test_dataset2.sh
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cat build/build_scripts/.workflow.config2 | sed 's/YYY/2/g' > .workflow.config
spt workflow configure --workflow='tabular import' --config-file=.workflow.config
nextflow run .
spt graphs upload-importances --config_path=build/build_scripts/.graph.config --importances_csv_path test/test_data/gnn_importances/2.csv
spt graphs upload-importances --config_path=build/build_scripts/.graph.config2 --importances_csv_path test/test_data/gnn_importances/2.csv
cat work/*/*/.command.log

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