prevent package caching in Docker images #288
Merged
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
CarlinLiao
changed the title
|
The images are indeed smaller. I did a release with the version bumps so this is ready to merge as soon as tests pass. |
CarlinLiao
added a commit
that referenced
this pull request
Jan 17, 2024
* prevent pip caching * Doing version bumps to prepare for release of images with new caching setup * Attempt to keep apt caching to a minimum. --------- Co-authored-by: James Mathews <[email protected]>
jimmymathews
added a commit
that referenced
this pull request
Jan 19, 2024
* remove network option, start adding singularity * fix some typos * deprecate lsf support and clean up container workflow option * add rule to publish spt-development image as nadeemlab/spt * prevent package caching in Docker images (#288) * prevent pip caching * Doing version bumps to prepare for release of images with new caching setup * Attempt to keep apt caching to a minimum. --------- Co-authored-by: James Mathews <[email protected]> * fix some typos and add the retag * one character typo * Make UMAP test actually check status * remove unnecessary runOptions from nextflow singularity * pin image used for each workflow * move cuda image determination upstream * update graph workflow docs * improve doc flow * ensure singularity training is provided GPU(s) * add a note about singularity env variable settings * fix db config copy in nextflow * Soften warning language * Version bump of spatialprofilingtoolbox --------- Co-authored-by: James Mathews <[email protected]> Co-authored-by: James Mathews <[email protected]>
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Closes #274. All tests pass. Ideally, I'd like to bring back the
workflowDocker image in this PR as well to serve #287.