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Supply UMAP position information as virtual slide #350

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merged 12 commits into from
Sep 3, 2024
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jimmymathews
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This is not merged yet, but I released the application images for frontend development purposes.
The functionality unrelated to UMAPs seems unaffected.

You can get the new data just by supplying the sample name "UMAP virtual slide":

 curl 'http://oncopathtk.org/api/cell-data-binary/?study=Melanoma+intralesional+IL2&sample=UMAP+virtual+sample' > payload.bin

View it with:

tail -c +21 payload.bin | xxd -b -c 20 | less

I think we should wait to merge until we have tested it in the frontend.

@jimmymathews
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There is also a new flag in the study summary, has_umap, to indicate if this is available for the given study.

@jimmymathews
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All tests pass except that it seems that there is a test (unrelated to this PR) which is not completely deteriministic (ripley). Might need to search harder for the location to set a random seed, or else relax the test.

@jimmymathews jimmymathews merged commit aad6fd9 into main Sep 3, 2024
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