feat: WIP make vcf api match with fasta api #19
natirtest.yml
on: push
check
12s
coverage
2m 37s
Matrix: test
Annotations
13 errors and 82 warnings
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test (stable)
test failed, to rerun pass `--lib`
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test (stable)
1 target failed:
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test (stable)
The process '/home/runner/.cargo/bin/cargo' failed with exit code 101
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test (beta)
test failed, to rerun pass `--lib`
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test (beta)
1 target failed:
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test (beta)
The process '/home/runner/.cargo/bin/cargo' failed with exit code 101
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test (macos)
test failed, to rerun pass `--lib`
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test (macos)
1 target failed:
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test (macos)
The process '/Users/runner/.cargo/bin/cargo' failed with exit code 101
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test (windows)
test failed, to rerun pass `--lib`
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test (windows)
1 target failed:
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test (windows)
The process 'C:\Users\runneradmin\.cargo\bin\cargo.exe' failed with exit code 101
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coverage
Process completed with exit code 1.
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check
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions-rs/toolchain@v1, actions-rs/cargo@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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check
The following actions uses node12 which is deprecated and will be forced to run on node16: actions-rs/toolchain@v1, actions-rs/cargo@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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check:
src/format/vcf.rs#L200
unused variable: `rng`
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check:
src/lib.rs#L43
function `sequence` is never used
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check:
src/format/vcf.rs#L73
fields `filter_prefix`, `filter_suffix`, `info_type`, `info_number`, `sample_prefix`, and `sample_suffix` are never read
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check:
src/format/vcf.rs#L160
method `info` is never used
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check
`biotest` (lib) generated 4 warnings (run `cargo fix --lib -p biotest` to apply 1 suggestion)
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check
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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check
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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check
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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check
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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test (stable)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions-rs/toolchain@v1, actions-rs/cargo@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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test (stable)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions-rs/toolchain@v1, actions-rs/cargo@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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test (stable)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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test (stable)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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test (stable)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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test (stable)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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test (stable):
src/format/vcf.rs#L430
unused import: `std::io::Read as _`
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test (stable):
src/format/vcf.rs#L200
unused variable: `rng`
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test (stable):
src/lib.rs#L43
function `sequence` is never used
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test (stable):
src/format/vcf.rs#L73
fields `filter_prefix`, `filter_suffix`, `info_type`, `info_number`, `sample_prefix`, and `sample_suffix` are never read
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test (stable):
src/format/vcf.rs#L160
method `info` is never used
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test (stable):
src/format/vcf.rs#L73
fields `filter_prefix`, `filter_suffix`, `info_type`, `info_number`, `sample_prefix`, and `sample_suffix` are never read
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test (stable):
src/format/vcf.rs#L455
constant `TRUTH_FILTER` is never used
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test (stable):
src/format/vcf.rs#L462
constant `TRUTH_INFO` is never used
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test (stable):
src/format/vcf.rs#L469
constant `TRUTH_SAMPLES` is never used
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test (stable)
`biotest` (lib) generated 4 warnings (run `cargo fix --lib -p biotest` to apply 1 suggestion)
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test (beta)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions-rs/toolchain@v1, actions-rs/cargo@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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test (beta)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions-rs/toolchain@v1, actions-rs/cargo@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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test (beta)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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test (beta)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
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test (beta)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
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test (beta)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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test (beta):
src/error.rs#L4
the item `thiserror` is imported redundantly
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test (beta):
src/format/vcf.rs#L430
unused import: `std::io::Read as _`
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test (beta):
src/format/vcf.rs#L200
unused variable: `rng`
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test (beta):
src/lib.rs#L43
function `sequence` is never used
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test (beta):
src/format.rs#L23
methods `header`, `record`, `records`, and `create` are never used
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test (beta):
src/format/vcf.rs#L73
fields `filter_prefix`, `filter_suffix`, `info_type`, `info_number`, `sample_prefix`, and `sample_suffix` are never read
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test (beta):
src/format/vcf.rs#L160
method `info` is never used
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test (beta):
src/format/vcf.rs#L73
fields `filter_prefix`, `filter_suffix`, `info_type`, `info_number`, `sample_prefix`, and `sample_suffix` are never read
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test (beta):
src/format/vcf.rs#L455
constant `TRUTH_FILTER` is never used
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test (beta):
src/format/vcf.rs#L462
constant `TRUTH_INFO` is never used
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test (macos)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions-rs/toolchain@v1, actions-rs/cargo@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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test (macos)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions-rs/toolchain@v1, actions-rs/cargo@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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test (macos):
src/format/vcf.rs#L430
unused import: `std::io::Read as _`
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test (macos):
src/format/vcf.rs#L200
unused variable: `rng`
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test (macos):
src/lib.rs#L43
function `sequence` is never used
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test (macos):
src/format/vcf.rs#L73
fields `filter_prefix`, `filter_suffix`, `info_type`, `info_number`, `sample_prefix`, and `sample_suffix` are never read
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test (macos):
src/format/vcf.rs#L160
method `info` is never used
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test (macos):
src/format/vcf.rs#L73
fields `filter_prefix`, `filter_suffix`, `info_type`, `info_number`, `sample_prefix`, and `sample_suffix` are never read
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test (macos):
src/format/vcf.rs#L455
constant `TRUTH_FILTER` is never used
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test (macos):
src/format/vcf.rs#L462
constant `TRUTH_INFO` is never used
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test (macos):
src/format/vcf.rs#L469
constant `TRUTH_SAMPLES` is never used
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test (macos)
`biotest` (lib) generated 4 warnings (run `cargo fix --lib -p biotest` to apply 1 suggestion)
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test (macos)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
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test (macos)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
|
test (macos)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
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test (macos)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
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test (windows)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions-rs/toolchain@v1, actions-rs/cargo@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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test (windows)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions-rs/toolchain@v1, actions-rs/cargo@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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test (windows):
src/format/vcf.rs#L200
unused variable: `rng`
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test (windows):
src/format/vcf.rs#L430
unused import: `std::io::Read as _`
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|
test (windows):
src/lib.rs#L43
function `sequence` is never used
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|
test (windows):
src/format/vcf.rs#L73
fields `filter_prefix`, `filter_suffix`, `info_type`, `info_number`, `sample_prefix`, and `sample_suffix` are never read
|
|
test (windows):
src/format/vcf.rs#L160
method `info` is never used
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test (windows):
src/format/vcf.rs#L73
fields `filter_prefix`, `filter_suffix`, `info_type`, `info_number`, `sample_prefix`, and `sample_suffix` are never read
|
|
test (windows):
src/format/vcf.rs#L455
constant `TRUTH_FILTER` is never used
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|
test (windows):
src/format/vcf.rs#L462
constant `TRUTH_INFO` is never used
|
|
test (windows):
src/format/vcf.rs#L469
constant `TRUTH_SAMPLES` is never used
|
|
test (windows)
`biotest` (lib) generated 4 warnings (run `cargo fix --lib -p biotest` to apply 1 suggestion)
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test (windows)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
|
test (windows)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
|
test (windows)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
|
test (windows)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
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coverage
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions-rs/toolchain@v1, actions-rs/[email protected]. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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coverage
The following actions uses node12 which is deprecated and will be forced to run on node16: actions-rs/toolchain@v1, actions-rs/[email protected]. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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coverage
Unable to download cargo-tarpaulin == latest from the tool cache: Error: Unexpected HTTP response: 403
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coverage
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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coverage
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
|
coverage
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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coverage
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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