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modified: gemini.refseq.sh
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naumenko-sa committed May 16, 2017
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Expand Up @@ -17,6 +17,7 @@ fi

# 1.remove VEP ensembl annotation, the file is already decomposed
vt rminfo ${family}-ensemble-annotated-decomposed.vcf.gz -t CSQ -o ${family}.no_vep.vcf.gz
tabix $family.no_vep.vcf.gz

# annotate with refseq - lets annotate only those variants we really need - much faster
#gemini.vep.refseq.sh ${family}.no_vep.vcf.gz
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