modified: cre.bam.validate.sh

naumenko-sa · Sep 6, 2017 · 7f26c22 · 7f26c22
1 parent d0a59ba
commit 7f26c22
Showing 1 changed file with 3 additions and 0 deletions.
diff --git a/cre.bam.validate.sh b/cre.bam.validate.sh
@@ -18,3 +18,6 @@ fi
 #uses picard wrapper from bcbio
 
 picard ValidateSamFile I=$bam > $bam.check
+
+#tries to read and checks EOF
+samtools quickcheck -vvvv $bam  &> $bam.quickcheck