modified: pc.upload_vcf.sh

naumenko-sa · Oct 3, 2018 · 910be56 · 910be56
1 parent 67a899b
commit 910be56
Showing 1 changed file with 3 additions and 0 deletions.
diff --git a/pc.upload_vcf.sh b/pc.upload_vcf.sh
@@ -4,5 +4,8 @@
 #for s in `cat samples_ready.txt`;do if grep -q $s samples_w_vcf_consent.txt;then echo $s >> 2upload.txt;fi;done;
 #for s in `cat 2upload.txt`;do fam=`echo $s | awk -F '_' '{print $1}'`;pc=`cat samples_w_vcf_consent.txt | grep $s | awk '{print $1}'`;if [ -d $fam ]; then cd $fam;if [ -f $s.vcf ];then pc.upload_vcf.sh $pc $s.vcf;fi;cd ..;fi;done;
 
+# $1 = PC ID
+# $2 = vcf
+
 module load python/3.5.2
 python3 ~/cre/pc.upload_vcf.py $1 $2  ~/work/project_cheo/pc.txt phenomecentral.org