modified: cre.sh

naumenko-sa · Oct 23, 2018 · d6262d0 · d6262d0
1 parent 54eb262
commit d6262d0
Showing 1 changed file with 6 additions and 1 deletion.
diff --git a/cre.sh b/cre.sh
@@ -11,7 +11,7 @@
 # 	make_report=[0|1] default = 1
 # 	type = [ wes.regular (default) | wes.synonymous | wes.fast | rnaseq | wgs | annotate (only for cleaning)]
 #	max_af = af filter, default = 0.01
-#	loader [ default = gemini | vcf2db ] - load used to create gemini database
+#	loader [ default = vcf2db | gemini ] - load used to create gemini database
 ####################################################################################################
 
 #PBS -l walltime=20:00:00,nodes=1:ppn=1
@@ -242,6 +242,11 @@ then
     export severity_filter=ALL
 fi
 
+if [ -z $loader ]
+then
+    export loader="vcf2db"
+fi
+
 #no cleanup by default
 if [ -z $cleanup ]
 then