test ggd recipe

naumenko-sa · Apr 9, 2019 · f789aee · f789aee
1 parent a17b485
commit f789aee
Show file tree

Hide file tree

Showing 2 changed files with 5 additions and 45 deletions.
diff --git a/cre.sv.validate_bed.py b/cre.sv.validate_bed.py
diff --git a/cre.test_ggd_recipe.sh b/cre.test_ggd_recipe.sh
@@ -0,0 +1,5 @@
+#!/bin/bash
+date
+export PYTHONPATH=/hpf/largeprojects/ccmbio/naumenko/tools/cloudbiolinux:$PYTHONPATH
+python -c 'from cloudbio.biodata.ggd import install_recipe; install_recipe("/hpf/largeprojects/ccmbio/naumenko/test", "/hpf/largeprojects/ccmbio/naumenko/tools/bcbio", "gnomad_exome.yaml", "hg38")'
+date