[Fix]: Properly collect all dependencies in a configuration (#255)

.run/Remote.run.xml

@@ -0,0 +1,15 @@
+<component name="ProjectRunConfigurationManager">
+  <configuration default="false" name="Remote" type="Remote">
+    <option name="USE_SOCKET_TRANSPORT" value="true" />
+    <option name="SERVER_MODE" value="false" />
+    <option name="SHMEM_ADDRESS" />
+    <option name="HOST" value="localhost" />
+    <option name="PORT" value="5005" />
+    <option name="AUTO_RESTART" value="false" />
+    <RunnerSettings RunnerId="Debug">
+      <option name="DEBUG_PORT" value="5005" />
+      <option name="LOCAL" value="false" />
+    </RunnerSettings>
+    <method v="2" />
+  </configuration>
+</component>

common/src/main/java/net/neoforged/gradle/common/util/ConfigurationUtils.java

@@ -15,10 +15,7 @@
 import org.gradle.util.internal.GUtil;
 
 import java.io.File;
-import java.util.ArrayList;
-import java.util.HashSet;
-import java.util.List;
-import java.util.Set;
+import java.util.*;
 import java.util.function.Function;
 
 public class ConfigurationUtils {
@@ -39,8 +36,8 @@ private ConfigurationUtils() {
     public static void extendsFrom(final Project project, final Configuration target, final Configuration... configurations) {
         for (Configuration configuration : configurations) {
             //We treat each configuration as a dependency collector in and of it-self, and copy the dependencies and dependency constraints to the target configuration.
-            target.getDependencies().addAllLater(project.provider(configuration::getDependencies));
-            target.getDependencyConstraints().addAllLater(project.provider(configuration::getDependencyConstraints));
+            target.getDependencies().addAllLater(project.provider(configuration::getAllDependencies));
+            target.getDependencyConstraints().addAllLater(project.provider(configuration::getAllDependencyConstraints));
         }
     }