fix EBRAINS errors

nest · Sep 18, 2024 · 759c099 · 759c099
1 parent a7d130e
commit 759c099
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Showing 3 changed files with 17 additions and 37 deletions.
diff --git a/...ks/notebooks/eprop_plasticity/eprop_supervised_classification_evidence-accumulation.ipynb b/...ks/notebooks/eprop_plasticity/eprop_supervised_classification_evidence-accumulation.ipynb
@@ -782,7 +782,6 @@
     "\n",
     "plt.rcParams.update(\n",
     "    {\n",
-    "        \"font.sans-serif\": \"Arial\",\n",
     "        \"axes.spines.right\": False,\n",
     "        \"axes.spines.top\": False,\n",
     "        \"axes.prop_cycle\": cycler(color=[colors[\"blue\"], colors[\"red\"]]),\n",
@@ -814,9 +813,7 @@
     "\n",
     "axs[-1].set_xlabel(\"training iteration\")\n",
     "axs[-1].set_xlim(1, n_iter)\n",
-    "axs[-1].xaxis.get_major_locator().set_params(integer=True)\n",
-    "\n",
-    "fig.tight_layout()"
+    "axs[-1].xaxis.get_major_locator().set_params(integer=True)\n"
    ]
   },
   {
@@ -919,17 +916,16 @@
     "\n",
     "fig, axs = plt.subplots(3, 1, sharex=True, figsize=(3, 4))\n",
     "\n",
-    "plot_weight_time_course(axs[0], events_wr, nrns_in[:n_record_w], nrns_rec[:n_record_w], \"in_rec\", r\"$W_\\text{in}$ (pA)\")\n",
+    "plot_weight_time_course(axs[0], events_wr, nrns_in[:n_record_w], nrns_rec[:n_record_w], \"in_rec\", r\"$W_{in}$ (pA)\")\n",
     "plot_weight_time_course(\n",
-    "    axs[1], events_wr, nrns_rec[:n_record_w], nrns_rec[:n_record_w], \"rec_rec\", r\"$W_\\text{rec}$ (pA)\"\n",
+    "    axs[1], events_wr, nrns_rec[:n_record_w], nrns_rec[:n_record_w], \"rec_rec\", r\"$W_{rec}$ (pA)\"\n",
     ")\n",
-    "plot_weight_time_course(axs[2], events_wr, nrns_rec[:n_record_w], nrns_out, \"rec_out\", r\"$W_\\text{out}$ (pA)\")\n",
+    "plot_weight_time_course(axs[2], events_wr, nrns_rec[:n_record_w], nrns_out, \"rec_out\", r\"$W_{out}$ (pA)\")\n",
     "\n",
     "axs[-1].set_xlabel(r\"$t$ (ms)\")\n",
     "axs[-1].set_xlim(0, steps[\"task\"])\n",
     "\n",
-    "fig.align_ylabels()\n",
-    "fig.tight_layout()"
+    "fig.align_ylabels()\n"
    ]
   },
   {
@@ -981,8 +977,6 @@
     "\n",
     "cbar = plt.colorbar(cmesh, cax=axs[1, 1].inset_axes([1.1, 0.2, 0.05, 0.8]), label=\"weight (pA)\")\n",
     "\n",
-    "fig.tight_layout()\n",
-    "\n",
     "plt.show()"
    ]
   }

diff --git a/notebooks/notebooks/eprop_plasticity/eprop_supervised_regression_handwriting.ipynb b/notebooks/notebooks/eprop_plasticity/eprop_supervised_regression_handwriting.ipynb
@@ -709,7 +709,6 @@
     "\n",
     "plt.rcParams.update(\n",
     "    {\n",
-    "        \"font.sans-serif\": \"Arial\",\n",
     "        \"axes.spines.right\": False,\n",
     "        \"axes.spines.top\": False,\n",
     "        \"axes.prop_cycle\": cycler(color=[colors[\"blue\"], colors[\"red\"]]),\n",
@@ -750,9 +749,7 @@
     "ax.set_xlabel(r\"$y_0$ and $y^*_0$\")\n",
     "ax.set_ylabel(r\"$y_1$ and $y^*_1$\")\n",
     "\n",
-    "ax.axis(\"equal\")\n",
-    "\n",
-    "fig.tight_layout()"
+    "ax.axis(\"equal\")\n"
    ]
   },
   {
@@ -777,8 +774,7 @@
     "ax.set_xlabel(\"training iteration\")\n",
     "ax.set_xlim(1, n_iter)\n",
     "ax.xaxis.get_major_locator().set_params(integer=True)\n",
-    "ax.legend(bbox_to_anchor=(1.01, 0.5), loc=\"center left\")\n",
-    "fig.tight_layout()"
+    "ax.legend(bbox_to_anchor=(1.01, 0.5), loc=\"center left\")\n"
    ]
   },
   {
@@ -877,17 +873,16 @@
     "\n",
     "fig, axs = plt.subplots(3, 1, sharex=True, figsize=(3, 4))\n",
     "\n",
-    "plot_weight_time_course(axs[0], events_wr, nrns_in[:n_record_w], nrns_rec[:n_record_w], \"in_rec\", r\"$W_\\text{in}$ (pA)\")\n",
+    "plot_weight_time_course(axs[0], events_wr, nrns_in[:n_record_w], nrns_rec[:n_record_w], \"in_rec\", r\"$W_{in}$ (pA)\")\n",
     "plot_weight_time_course(\n",
-    "    axs[1], events_wr, nrns_rec[:n_record_w], nrns_rec[:n_record_w], \"rec_rec\", r\"$W_\\text{rec}$ (pA)\"\n",
+    "    axs[1], events_wr, nrns_rec[:n_record_w], nrns_rec[:n_record_w], \"rec_rec\", r\"$W_{rec}$ (pA)\"\n",
     ")\n",
-    "plot_weight_time_course(axs[2], events_wr, nrns_rec[:n_record_w], nrns_out, \"rec_out\", r\"$W_\\text{out}$ (pA)\")\n",
+    "plot_weight_time_course(axs[2], events_wr, nrns_rec[:n_record_w], nrns_out, \"rec_out\", r\"$W_{out}$ (pA)\")\n",
     "\n",
     "axs[-1].set_xlabel(r\"$t$ (ms)\")\n",
     "axs[-1].set_xlim(0, steps[\"task\"])\n",
     "\n",
-    "fig.align_ylabels()\n",
-    "fig.tight_layout()"
+    "fig.align_ylabels()\n"
    ]
   },
   {
@@ -939,8 +934,6 @@
     "\n",
     "cbar = plt.colorbar(cmesh, cax=axs[1, 1].inset_axes([1.1, 0.2, 0.05, 0.8]), label=\"weight (pA)\")\n",
     "\n",
-    "fig.tight_layout()\n",
-    "\n",
     "plt.show()"
    ]
   }

diff --git a/notebooks/notebooks/eprop_plasticity/eprop_supervised_regression_infinite-loop.ipynb b/notebooks/notebooks/eprop_plasticity/eprop_supervised_regression_infinite-loop.ipynb
@@ -693,7 +693,6 @@
     "\n",
     "plt.rcParams.update(\n",
     "    {\n",
-    "        \"font.sans-serif\": \"Arial\",\n",
     "        \"axes.spines.right\": False,\n",
     "        \"axes.spines.top\": False,\n",
     "        \"axes.prop_cycle\": cycler(color=[colors[\"blue\"], colors[\"red\"]]),\n",
@@ -734,9 +733,7 @@
     "ax.set_xlabel(r\"$y_0$ and $y^*_0$\")\n",
     "ax.set_ylabel(r\"$y_1$ and $y^*_1$\")\n",
     "\n",
-    "ax.axis(\"equal\")\n",
-    "\n",
-    "fig.tight_layout()"
+    "ax.axis(\"equal\")\n"
    ]
   },
   {
@@ -761,8 +758,7 @@
     "ax.set_xlabel(\"training iteration\")\n",
     "ax.set_xlim(1, n_iter)\n",
     "ax.xaxis.get_major_locator().set_params(integer=True)\n",
-    "ax.legend(bbox_to_anchor=(1.01, 0.5), loc=\"center left\")\n",
-    "fig.tight_layout()"
+    "ax.legend(bbox_to_anchor=(1.01, 0.5), loc=\"center left\")\n"
    ]
   },
   {
@@ -861,17 +857,16 @@
     "\n",
     "fig, axs = plt.subplots(3, 1, sharex=True, figsize=(3, 4))\n",
     "\n",
-    "plot_weight_time_course(axs[0], events_wr, nrns_in[:n_record_w], nrns_rec[:n_record_w], \"in_rec\", r\"$W_\\text{in}$ (pA)\")\n",
+    "plot_weight_time_course(axs[0], events_wr, nrns_in[:n_record_w], nrns_rec[:n_record_w], \"in_rec\", r\"$W_{in}$ (pA)\")\n",
     "plot_weight_time_course(\n",
-    "    axs[1], events_wr, nrns_rec[:n_record_w], nrns_rec[:n_record_w], \"rec_rec\", r\"$W_\\text{rec}$ (pA)\"\n",
+    "    axs[1], events_wr, nrns_rec[:n_record_w], nrns_rec[:n_record_w], \"rec_rec\", r\"$W_{rec}$ (pA)\"\n",
     ")\n",
-    "plot_weight_time_course(axs[2], events_wr, nrns_rec[:n_record_w], nrns_out, \"rec_out\", r\"$W_\\text{out}$ (pA)\")\n",
+    "plot_weight_time_course(axs[2], events_wr, nrns_rec[:n_record_w], nrns_out, \"rec_out\", r\"$W_{out}$ (pA)\")\n",
     "\n",
     "axs[-1].set_xlabel(r\"$t$ (ms)\")\n",
     "axs[-1].set_xlim(0, steps[\"task\"])\n",
     "\n",
-    "fig.align_ylabels()\n",
-    "fig.tight_layout()"
+    "fig.align_ylabels()\n"
    ]
   },
   {
@@ -923,8 +918,6 @@
     "\n",
     "cbar = plt.colorbar(cmesh, cax=axs[1, 1].inset_axes([1.1, 0.2, 0.05, 0.8]), label=\"weight (pA)\")\n",
     "\n",
-    "fig.tight_layout()\n",
-    "\n",
     "plt.show()"
    ]
   }