Fix style

neuromaps/datasets/__init__.py

@@ -14,4 +14,3 @@
 from .annotations import (
     available_annotations, available_tags, fetch_annotation
 )
-

neuromaps/datasets/annotations.py

@@ -292,13 +292,13 @@ def fetch_annotation(*, source=None, desc=None, space=None, den=None, res=None,
 
     # get meta_id for each dataset
     meta_ids, matched_meta = _matched_to_meta(info)
-    
+
     # warning for specific maps
     if verbose > 0:
         for _id, entry in zip(meta_ids, matched_meta):
             if "warning" in entry:
                 print(f"[Warning] for {_id}: {entry['warning']}")
-    
+
     # print references
     if verbose > 0:
         print(
@@ -381,7 +381,6 @@ def describe_annotations(annots, format="plaintext"):
             print("   Secondary references:")
             for ref in row["refs.secondary"]:
                 print(f"      ({ref['bibkey']}) {ref['citation']}")
-            return None
     elif format == "dataframe":
         return df_annot_info[[
             "annot.key", "full_desc",
@@ -407,9 +406,11 @@ def describe_annotations(annots, format="plaintext"):
                 f"{i + 1} "
                 f"& {row['annot.source']} & {row['annot.desc']} "
                 f"& {row['annot.space']} & {row['annot.denres']} "
-                f"& {row['full_desc']} & \citep{{{','.join(refs)}}} "
+                rf"& {row['full_desc']} & \citep{{{','.join(refs)}}} "
                 "\\\\"
             )
     else:
         raise ValueError("Invalid format. Must be one of 'plaintext', "
                          "'dataframe', or 'latex'.")
+
+    return None

neuromaps/datasets/utils.py

@@ -416,7 +416,7 @@ def _check_meta_json():
 def _fill_meta_json_refs(bib_file, json_file, overwrite=False, use_defaults=False):
     """
     Fill in citation information for references in a JSON file.
-    
+
     For internal use only.
 
     Parameters
@@ -462,4 +462,3 @@ def _get_citation(key):
 
     with open(json_file, "w") as dst:
         json.dump(nm_meta, dst, indent=4)
-

neuromaps/images.py

@@ -114,8 +114,8 @@ def fix_coordsys(fn, val=3):
 
 def load_nifti(img):
     """
-    Load nifti file `img`. 
-    
+    Load nifti file `img`.
+
     If `img` is already a loaded (i.e. is a nib.Nifti1Image object),
     it is returned as-is.
 
@@ -203,7 +203,7 @@ def load_data(data):
         # niimg_like or path_like (nifti)
         if (isinstance(err, AttributeError)
             or (
-                "os.PathLike" in str(err) 
+                "os.PathLike" in str(err)
                 and "not Nifti1Image" in str(err)
                 )
            ):

neuromaps/tests/test_plotting.py

@@ -17,4 +17,4 @@ def test_register_cmap():
     if "caret_blueorange" in matplotlib.colormaps:
         assert True
     else:
-        assert False
+        assert False

pyproject.toml

@@ -58,9 +58,15 @@ test = [
 requires = ["setuptools", "versioneer[toml]"]
 build-backend = "setuptools.build_meta"
 
+[tool.setuptools]
+include-package-data = true
+
 [tool.setuptools.packages]
 find = {}
 
+[tool.setuptools.package-data]
+"*" = ["*.json", "*.bib"]
+
 [tool.setuptools.dynamic]
 version = {attr = "neuromaps.__version__"}
 
@@ -84,11 +90,10 @@ exclude = [
 target-version = "py38"
 
 [tool.ruff.lint]
-select = ["E", "F", "B", "D", "NPY"]
+select = ["E", "F", "B", "W", "D", "NPY"]
 ignore = [
-    "E402"
+    "E402"  # Module level import not at top of cell
 ]
-extend-select = ["E302"]
 preview = true
 
 [tool.ruff.lint.pydocstyle]