Merge branch 'master' of github.com:nextflow-io/nextflow

nextflow-io · Oct 3, 2014 · c6762cc · c6762cc
2 parents 2867d05 + c1121ee
commit c6762cc
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Showing 3 changed files with 10 additions and 4 deletions.
diff --git a/README.md b/README.md
@@ -142,6 +142,7 @@ Currently the following clusters are supported:
   + Oracle Grid Engine (SGE)
   + Platform LSF
   + SLURM (beta)
+  + PBS/Torque (beta)
 
 
 By default processes are parallelized by spanning multiple threads in the machine where the pipeline is launched.
@@ -214,6 +215,11 @@ Community
 You can post questions, or report problems by using the Nextflow Google group available
 at this link https://groups.google.com/forum/#!forum/nextflow
 
+Build servers 
+--------------
+
+  * [Travis-CI](https://travis-ci.org/nextflow-io/nextflow) 
+  * [Groovy Joint build](http://ci.groovy-lang.org/project.html?projectId=JointBuilds_Nextflow&guest=1) 
 
 License
 -------

diff --git a/build.gradle b/build.gradle
@@ -24,7 +24,7 @@ apply plugin: 'idea'
 
 if (System.getenv('CI_GROOVY_VERSION')) {
     // Add ability to test with upcoming versions of Groovy
-    groovyVer = System.getenv('CI_GROOVY_VERSION')
+    def groovyVer = System.getenv('CI_GROOVY_VERSION')
     if (groovyVer.endsWith('-SNAPSHOT')) {
         allprojects {
             repositories {

diff --git a/docs/script.rst b/docs/script.rst
@@ -525,7 +525,7 @@ for the given file and allows you to read the content in single characters, line
 
     myReader = myFile.newReader()
     String line
-    while( ( line = myReader.readLine() ) {
+    while( line = myReader.readLine() ) {
         println line
     }
     myReader.close()
@@ -536,7 +536,7 @@ processing the file since it is managed automatically by the method itself. The
 
     myFile.withReader {
         String line
-        while( ( line = myReader.readLine() ) {
+        while( line = myReader.readLine() ) {
             println line
         }
     }
@@ -579,7 +579,7 @@ file content from the first file into the second one replacing all the ``U`` cha
     sourceFile.withReader { source ->
         targetFile.withWriter { target ->
             String line
-            while( (line=source.readLine()) {
+            while( line=source.readLine() ) {
                 target << line.replaceAll('U','X')
             }
         }