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Releases: nextflow-io/nextflow

Version 0.22.6

04 Dec 23:19
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  • Fixed Script execution terminates before all operators complete #259
  • Fixed A script variable with the same name of a global variable invalidate process resume #254
  • Fixed when is not recognised when used before an input and script is not declared
  • Fixed count operator hung when applied to a dataflow variable
  • Added warning message when an input/output set defines only one component #216 #251
  • Reduced log verbosity of Ignite Scheduler classes

Version 0.22.5

17 Nov 12:52
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  • Fixed QueueSize=1 doesn't handle multi-cpu processes #246
  • Fixed Accessing to a not defined script params should raise an error #243
  • Fixed An input channel evaluating to null results in a misleading error message #242
  • Fixed Use of publicDnsName should failover to IP if no name is available #240
  • Fixed Use of yum in cloud boothook may cause problems #239
  • Fixed Execution hang when an operator invokes the exit function and no processes have run
  • Fixed fromFilePairs does not match patterns containing curly brackets w/o a star wild character
  • Added -dump-hashes command line option to print task key hash keys #211
  • Improved logging

Version 0.22.4

04 Nov 21:26
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  • Added --no-requeue flag to SLURM job submission
  • Report log content when a wrapper script execution fail #213
  • Improved error message when cache DB cannot be created
  • Logging error track trace on task re-submit failure
  • Fixed Channel.fromPath throws an exception when the argument is a S3 path
  • Modified make_temp so that uses NXF_TEMP when defined

Version 0.22.3

12 Oct 11:30
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  • Fixed PBS qsub fails when the job name is longer than 15 chars #228
  • Fixed Spread operator doesn't connect channels in DAG #231
  • Fixed amazon prices file format parser
  • Added Cleanup scratch dir upon process completion #230
  • Added optional flag to output file declaration
  • Added region option to cloud command
  • Added Check for missing instance type description

Version 0.22.2

03 Oct 16:00
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  • Fixed Copy input files to scratch directory #197
  • Fixed PBS qsub fails when the job name starts with a dot #228
  • Fixed issue when staging-out a symlink output file
  • Fixed log warning when running a script in the console

Version 0.22.1

26 Sep 10:54
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  • Fixed Nested symlinks are not resolved by Docker container mounts #222
  • Fixed Nextflow execution log fail to get field starting with '%' #223
  • Fixed Nextflow console launcher
  • Added ContainerCreation status to K8S executor
  • Expand = to == in filter expressions to avoid misleading results

Version 0.22.0

21 Sep 13:15
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  • Fixed queue-size attribute for local executor
  • Fixed Kubernetes pod id parse issue
  • Moved .nextflow.history and .cache files under .nextflow directory

[0.22.0.RC2]

  • Fixed File name containing glob wildcards cannot be captured in the process output #219
  • Fixed Work dir containing glob wildcards are not supported #194
  • Added revision id to execution log
  • Added scriptId, scriptFile and scriptName attributes to workflow metadata object
  • Added time delay penalty on error burst to prevent failing node to drain all pending jobs
  • Load classes without creating an instance of each cloud driver
  • Improved AWS driver missing credentials error report
  • Merged experimental Kubernetes support
  • Improved clean and log command
  • Added EFS default mount path
  • Refactored daemon shutdown

[0.22.0.RC1]

  • Fixed Implement clean up command #19
  • Fixed Trace file should include cached tasks #114
  • Added ability to log each command run #108
  • Added new cloud command
  • Added AWS EFS support
  • Added AWS Spot instance error fail-over
  • Added support cloud auto scaling
  • Added Ignite job-stealing distributed scheduler

Version 0.21.3

26 Aug 19:20
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  • Fixed Spaces in work directory path stops SLURM from accepting the job #218

Version 0.21.2

12 Aug 11:29
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  • Fixed PBS professional batch scheduler submission error #209
  • Fixed Reference to a collection of files is not resolved properly in the output section #214
  • Improved failed and ignored processes reporting
  • Fixed null workflow.projectDir when launching a script file
  • Do no output link file when followLinks option is disabled

Version 0.21.1

29 Jul 12:45
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  • Fixed NFS work dir is not detected correctly #206
  • Fixed splitFasta operator with the file parameter will not split into single fasta files #181
  • Enable log file for commands when debug or trace option is specified
  • Added validation checks to fromPath and fromFilePairs methods