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Releases: nextflow-io/nextflow

Version 0.18.1

26 Apr 11:58
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  • Fixed Input files containing a parenthesis in the path are not staged properly #133.
  • Fixed Process execution hangs when using Ignite executor with a foreign work path #136.
  • Fixed Sort output files in lexicographical order #137.
  • Added false as sort option in the collectFile operator.

Version 0.18.0

11 Apr 11:46
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  • Added legacy option to docker configuration properties.
    Added support for --cpuset-cpus Docker command line option. See #115
  • Added region option to AWS S3 config properties #116
  • Added support for AWS S3 multipart uploads #112
  • Added NXF_TRACE to enable application trace logging
  • Added experimental support for Shifter containers
  • Added experimental support for HTCondor scheduler
  • Fixed Input file names staged into a subdirectory are not expanded properly #111
  • Fixed Main script class name collides with variable names in global scope #113
  • Fixed config file having a name as a top level config options raise a MissingPropertyException #117
  • Fixed Process script errors should not be ignored #119
  • Fixed timeline margin for long labels - fix #120
  • Fixed Process start time is not reported correctly when using the Ignite executor #122
  • Fixed Allow for a per-job memory limit for LSF executor #123
  • Fixed Memory reservation should not be divided by the number of cpus #124
  • Fixed Mixed content errors if timeline.html served over HTTPS #127
  • Fixed Nextflow won't start if a proxy URL env variable contains a trailing slash #109
  • Set poolSize as the number of avail cpus
  • Set java.io.tmpdir to the same path as NXF_TEMP
  • Updated Apache Ignite to version 1.5.0
  • Updated Logback to version 1.1.6
  • Updated Slf4j to version 1.7.21
  • Updated JGit to version 4.3.0.201604071810-r

Version 0.17.3

18 Feb 13:06
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  • Fixed task status in the trace file when execution is retried #107
  • Improved Ignite scheduling and node resources allocation
  • Upgraded Logback to version 1.1.5
  • Upgrade Slf4j to version 1.7.16

Version 0.17.2

02 Feb 17:27
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  • Fixed Channel.subscribe is invoked after the Workflow.onComplete handler #105
  • Changed default trace file name to trace.txt #106
  • Changed launcher classpath cache file under user home
  • Added JobStealingFailoverSpi to Ignite executor
  • Update JGit to version 4.2.0

Version 0.17.1

21 Jan 15:56
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  • Fixed splitText performance issue #102
  • Fixed execution hang when a process script block report and error and retry error strategy is set
  • Added support for partition to SLURM executor #101
  • Use a dedicated reentrant lock to handle task completion event

Version 0.17.0

07 Jan 13:31
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  • Fixed PBS/Torque executor does not parse correctly job IDs #96
  • Fixed issue when TraceFileObsever tries to access task context metadata on task completion #98
  • Fixed support for Git local bare repositories #95
  • Fixed single quotes in file names result in a script error #99
  • Added workflow.sessionId and workflow.resume attributes #94
  • Added output into multiple channels #97
  • Added attempt field to execution trace file
  • Do not allow output clause to reference files outside the process working directory (see #91)

Version 0.16.5

18 Dec 09:32
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  • Fixed race condition when creating cached launcher classpath file
  • Fixed run for local repositories
  • Enhanced output file handling #91
  • Set thread pool size to avail cpus +1
  • Removed config object from remote session that was causing a serialization issue
  • Upgraded Slf4j to version 1.7.13

Version 0.16.4

06 Dec 16:49
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  • Use batch strategy to kill pending cluster jobs on termination #93
  • Added support for Git Large File Storage (LFS) extension #82
  • Added configurable thread pool factory #92

Version 0.16.3

30 Nov 16:02
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  • Fixed #90. System user.dir property is cached causing unexpected behaviour.
  • Allow directories in a process input file name declaration. See #91.
  • Improved build script for local snapshot deployment.
  • Updated cli-args test.

Version 0.16.2

14 Nov 18:22
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  • Fixed #87. Include current configuration profile option in the workflow metadata.
  • Fixed #86. Failure if work dir contains one or more blank characters.
  • Fixed #76. Include process name and tag information in process wrapper script.