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Switch pivot from JN.1 to XEC #124

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merged 2 commits into from
Jan 29, 2025
Merged

Switch pivot from JN.1 to XEC #124

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a7d9840
Switch pivot from JN.1 to XEC
corneliusroemer Jan 29, 2025
bdc1c1a
Swap from JN.1 to XEC in the viz legends
trvrb Jan 29, 2025
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8 changes: 4 additions & 4 deletions config/config.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -54,17 +54,17 @@ models:
gisaid:
nextstrain_clades:
global:
pivot: "24A"
pivot: "24F"
pango_lineages:
global:
pivot: "JN.1"
pivot: "XEC"
open:
nextstrain_clades:
global:
pivot: "24A"
pivot: "24F"
pango_lineages:
global:
pivot: "JN.1"
pivot: "XEC"

# Model configs
mlr_config: "config/mlr-config.yaml"
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8 changes: 4 additions & 4 deletions viz/src/App.jsx
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Expand Up @@ -41,8 +41,8 @@ function App() {
<h2>Clade growth advantage</h2>
<p>
These plots show the estimated growth advantage for given clades relative to clade
24A (lineage JN.1). This describes how many more secondary infections a variant causes
on average relative to clade 24A. Vertical bars show the 95% HPD. The "hierarchical" panel
24F (lineage XEC). This describes how many more secondary infections a variant causes
on average relative to clade 24F. Vertical bars show the 95% HPD. The "hierarchical" panel
shows pooled estimate of growth rates across different locations.
Results last updated {mlrCladesData?.modelData?.get('updated') || 'loading'}.
</p>
Expand All @@ -64,8 +64,8 @@ function App() {
<h2>Lineage growth advantage</h2>
<p>
These plots show the estimated growth advantage for given Pango lineages relative to
lineage JN.1. This describes how many more secondary infections a variant causes
on average relative to lineage JN.1. Vertical bars show the 95% HPD.
lineage XEC. This describes how many more secondary infections a variant causes
on average relative to lineage XEC. Vertical bars show the 95% HPD.
The "hierarchical" panel shows pooled estimate of growth rates across different locations.
Results last updated {mlrLineagesData?.modelData?.get('updated') || 'loading'}.
</p>
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