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Update RKI_INDEX_COL since SEQUENCE.ID renamed to igs_id
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j23414 committed Sep 12, 2024
1 parent a17a693 commit a587f18
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2 changes: 1 addition & 1 deletion bin/transform-rki-data-to-ndjson
Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,7 @@ Turn RKI files into ndjson format

import typer

RKI_INDEX_COL = "SEQUENCE.ID"
RKI_INDEX_COL = "igs_id"

def main(
input_rki_sequences: str = typer.Option(..., help="Input file"),
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