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Download nextclade 2.14.0 binary instead of latest
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Next step is to make ingest work with nextclade3 which should be easy

But fixing the version is safer for now
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corneliusroemer committed Jan 16, 2024
1 parent 4e90c5a commit c917150
Showing 1 changed file with 3 additions and 2 deletions.
5 changes: 3 additions & 2 deletions workflow/snakemake_rules/nextclade.smk
Original file line number Diff line number Diff line change
Expand Up @@ -134,9 +134,10 @@ rule download_nextclade_executable:
shell:
"""
if [ "$(uname)" = "Darwin" ]; then
curl -fsSL "https://github.com/nextstrain/nextclade/releases/latest/download/nextclade-x86_64-apple-darwin" -o "nextclade"
curl -fsSL "https://github.com/nextstrain/nextclade/releases/download/2.14.0/nextclade-x86_64-apple-darwin" -o "nextclade"
else
curl -fsSL "https://github.com/nextstrain/nextclade/releases/latest/download/nextclade-x86_64-unknown-linux-gnu" -o "nextclade"
curl -fsSL "https://github.com/nextstrain/nextclade/releases/download/2.14.0/nextclade-x86_64-unknown-linux-gnu" -o "nextclade"
fi
chmod +x nextclade
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