fix: version nextclade in prepare_nextclade rule (dataset get) as well

This was erroneously omitted by me in #1089
nextstrain · Jan 16, 2024 · f79bb86 · f79bb86
1 parent fe28d17
commit f79bb86
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/workflow/snakemake_rules/main_workflow.smk b/workflow/snakemake_rules/main_workflow.smk
@@ -462,8 +462,8 @@ rule prepare_nextclade:
     conda: config["conda_environment"]
     shell:
         """
-        nextclade --version
-        nextclade dataset get --name {params.name} --output-zip {output.nextclade_dataset}
+        nextclade2 --version
+        nextclade2 dataset get --name {params.name} --output-zip {output.nextclade_dataset}
         """
 
 rule build_align: