Merge pull request #574 from nf-core/rnafusion_update_samtools

rnafusion hasta: update samtools_view_for arriba/starfusion to 6GB
nf-core · Oct 20, 2023 · 41288ee · 41288ee
2 parents fc3bb90 + 1f9a82a
commit 41288ee
Showing 1 changed file with 3 additions and 3 deletions.
diff --git a/conf/pipeline/rnafusion/hasta.config b/conf/pipeline/rnafusion/hasta.config
@@ -1,6 +1,6 @@
 process {
     withName:'CAT_FASTQ' {
-        memory = { check_max( 30.MB * task.attempt, 'memory'  ) }
+        memory = { check_max( 500.MB * task.attempt, 'memory'  ) }
         time   = { check_max( 4.h  * task.attempt, 'time'    ) }
         cpus = 1
     }
@@ -25,12 +25,12 @@ process {
         cpus = 2
     }
     withName:'SAMTOOLS_VIEW_FOR_ARRIBA' {
-        memory = { check_max( 500.MB * task.attempt, 'memory'  ) }
+        memory = { check_max( 6.GB * task.attempt, 'memory'  ) }
         time   = { check_max( 4.h  * task.attempt, 'time'    ) }
         cpus = 1
     }
     withName:'SAMTOOLS_VIEW_FOR_STARFUSION' {
-        memory = { check_max( 500.MB * task.attempt, 'memory'  ) }
+        memory = { check_max( 6.GB * task.attempt, 'memory'  ) }
         time   = { check_max( 4.h  * task.attempt, 'time'    ) }
         cpus = 1
     }