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Configuration for site PDC at KTH #569

Merged
merged 2 commits into from
Oct 12, 2023
Merged

Configuration for site PDC at KTH #569

merged 2 commits into from
Oct 12, 2023

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pontus
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@pontus pontus commented Oct 12, 2023


name: pdc_kth
about: Configuration for PDC, currently supporting dardel cluster

Please follow these steps before submitting your PR:

  • If your PR is a work in progress, include [WIP] in its title
  • Your PR targets the master branch
  • [x ] You've included links to relevant issues, if any
  • Requested review from @nf-core/maintainers and/or #request-review on slack

Steps for adding a new config profile:

  • Add your custom config file to the conf/ directory
  • Add your documentation file to the docs/ directory
  • Add your custom profile to the nfcore_custom.config file in the top-level directory
  • Add your custom profile to the README.md file in the top-level directory
  • Add your profile name to the profile: scope in .github/workflows/main.yml

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No singularity images or nextflow versions are currently preloaded on
dardel, to get started you can e.g. download nextflow through

```shell
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Is conda/mamba available there?

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There seems to be anaconda3 modules in various versions made by EasyBuild. I guess there's also a good chance of someone putting nextflow there directly.

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LGTM

@pontus pontus merged commit 3b05adc into nf-core:master Oct 12, 2023
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3 participants