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Factor out umi handling #3208

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Factor out umi handling

Factor out umi handling #3208

Triggered via pull request December 12, 2024 17:11
@pinin4fjordspinin4fjords
synchronize #1466
factor_out_umi
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Total duration 19m 58s
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on: pull_request
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ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run tests (subworkflows/nf-core/bam_dedup_umi/tests/main.nf.test docker NF-latest-everything)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run tests (subworkflows/nf-core/bam_dedup_umi/tests/main.nf.test docker NF-24.04.2)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run tests (tests/salmon.nf.test docker NF-24.04.2)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run tests (tests/kallisto.nf.test docker NF-latest-everything)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run tests (tests/kallisto.nf.test docker NF-24.04.2)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run tests (tests/salmon.nf.test docker NF-latest-everything)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run tests (tests/skip_qc.nf.test docker NF-latest-everything)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run tests (tests/skip_qc.nf.test docker NF-24.04.2)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run tests (tests/hisat2.nf.test docker NF-latest-everything)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run tests (tests/hisat2.nf.test docker NF-24.04.2)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run tests (tests/skip_trimming.nf.test docker NF-latest-everything)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run tests (tests/min_mapped_reads.nf.test docker NF-24.04.2)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run tests (tests/star_rsem.nf.test docker NF-24.04.2)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run tests (tests/min_mapped_reads.nf.test docker NF-latest-everything)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run tests (tests/default.nf.test docker NF-24.04.2)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run tests (tests/featurecounts_group_type.nf.test docker NF-latest-everything)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run tests (tests/star_rsem.nf.test docker NF-latest-everything)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run tests (tests/skip_trimming.nf.test docker NF-24.04.2)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run tests (tests/default.nf.test docker NF-latest-everything)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run tests (tests/umi.nf.test docker NF-24.04.2)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run tests (tests/umi.nf.test docker NF-latest-everything)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run tests (tests/remove_ribo_rna.nf.test docker NF-24.04.2)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run tests (tests/featurecounts_group_type.nf.test docker NF-24.04.2)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run tests (tests/remove_ribo_rna.nf.test docker NF-latest-everything)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
confirm-pass
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636