Fix more config selectors

nf-core · Dec 12, 2024 · 1bc1b73 · 1bc1b73
1 parent dbd3343
commit 1bc1b73
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/workflows/rnaseq/nextflow.config b/workflows/rnaseq/nextflow.config
@@ -140,7 +140,7 @@ if (!params.skip_alignment && params.aligner == 'star_salmon') {
                 ]
             }
 
-            withName: 'NFCORE_RNASEQ:RNASEQ:BAM_DEDUP_UMI_(STAR|HISAT2):BAM_SORT_STATS_SAMTOOLS:SAMTOOLS_INDEX' {
+            withName: 'NFCORE_RNASEQ:RNASEQ:BAM_DEDUP_UMI_STAR:BAM_SORT_STATS_SAMTOOLS:SAMTOOLS_INDEX' {
                 publishDir = [
                     path: { params.save_align_intermeds || params.save_umi_intermeds ? "${params.outdir}/${params.aligner}" : params.outdir },
                     mode: params.publish_dir_mode,
@@ -149,7 +149,7 @@ if (!params.skip_alignment && params.aligner == 'star_salmon') {
                 ]
             }
 
-            withName: 'NFCORE_RNASEQ:RNASEQ:BAM_DEDUP_UMI_(STAR|HISAT2):BAM_SORT_STATS_SAMTOOLS:BAM_STATS_SAMTOOLS:.*' {
+            withName: 'NFCORE_RNASEQ:RNASEQ:BAM_DEDUP_UMI_STAR:BAM_SORT_STATS_SAMTOOLS:BAM_STATS_SAMTOOLS:.*' {
                 ext.prefix = { "${meta.id}.transcriptome.sorted.bam" }
                 publishDir = [
                     path: { params.save_align_intermeds || params.save_umi_intermeds ? "${params.outdir}/${params.aligner}/samtools_stats" : params.outdir },