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Fix operators
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pinin4fjords committed Dec 12, 2024
1 parent 0751204 commit 3a90e82
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion workflows/rnaseq/nextflow.config
Original file line number Diff line number Diff line change
Expand Up @@ -147,7 +147,7 @@ if (!params.skip_alignment && params.aligner == 'star_salmon') {
ext.args = { [
'--two-pass',
meta.single_end ? '' : '--paired --remove-unpaired --remove-chimeric',
params.umitools_grouping_method ? "--algo '" + (params.umitools_grouping_method === 'directional' ? 'dir' : params.umitools_grouping_method === 'adjacency' ? 'adj' : 'cc') + "'" : '',
params.umitools_grouping_method ? "--algo '" + (params.umitools_grouping_method == 'directional' ? 'dir' : params.umitools_grouping_method == 'adjacency' ? 'adj' : 'cc') + "'" : '',
params.umitools_umi_separator ? "--umi-sep '${params.umitools_umi_separator}'" : '',
].join(' ').trim()}
}
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