Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

bump to v3.2.0 #3427

Merged
merged 2 commits into from
Jan 27, 2025
Merged
Changes from 1 commit
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
Prev Previous commit
template line break fixes
mirpedrol committed Jan 27, 2025

Verified

This commit was created on GitHub.com and signed with GitHub’s verified signature.
commit 0d9a4f13a4390d85674d93cc8e71adc3fab0d1af
6 changes: 3 additions & 3 deletions nf_core/pipeline-template/docs/output.md
Original file line number Diff line number Diff line change
@@ -15,7 +15,7 @@ The pipeline is built using [Nextflow](https://www.nextflow.io/) and processes d
{% if fastqc -%}

- [FastQC](#fastqc) - Raw read QC{% endif %}
{%- if multiqc -%}
{%- if multiqc %}
- [MultiQC](#multiqc) - Aggregate report describing results and QC from the whole pipeline
{%- endif %}
- [Pipeline information](#pipeline-information) - Report metrics generated during the workflow execution
@@ -34,7 +34,7 @@ The pipeline is built using [Nextflow](https://www.nextflow.io/) and processes d
</details>

[FastQC](http://www.bioinformatics.babraham.ac.uk/projects/fastqc/) gives general quality metrics about your sequenced reads. It provides information about the quality score distribution across your reads, per base sequence content (%A/T/G/C), adapter contamination and overrepresented sequences. For further reading and documentation see the [FastQC help pages](http://www.bioinformatics.babraham.ac.uk/projects/fastqc/Help/).
{%- endif -%}
{%- endif %}

{% if multiqc -%}

@@ -53,7 +53,7 @@ The pipeline is built using [Nextflow](https://www.nextflow.io/) and processes d
[MultiQC](http://multiqc.info) is a visualization tool that generates a single HTML report summarising all samples in your project. Most of the pipeline QC results are visualised in the report and further statistics are available in the report data directory.

Results generated by MultiQC collate pipeline QC from supported tools e.g. FastQC. The pipeline has special steps which also allow the software versions to be reported in the MultiQC output for future traceability. For more information about how to use MultiQC reports, see <http://multiqc.info>.
{%- endif -%}
{%- endif %}

### Pipeline information