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Update XTRegisterSameChannel documentation. #78

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Sep 30, 2024
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Update XTRegisterSameChannel documentation. #78

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7 changes: 6 additions & 1 deletion XTRegisterSameChannel.py
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Original file line number Diff line number Diff line change
Expand Up @@ -168,6 +168,12 @@ class RegisterSameChannelDialog(ieb.ImarisExtensionBase):
6. Auto mask - limit voxels used in registration to non zero voxels.
7. Samples per parameter - number of samples used during registration.

When performing registration we usually use the full resolution image, default selection for the
"Start registration at resolution" dropdown. When working with large images this may require a significant amount
of memory (RAM). When memory resources are constrained, one can try to start the registration at a higher level of
the image pyramid, coarser data representation, which requires less memory. Note that the closer one is to the apex
of the image pyramid the coarser the data representation which is potentially detrimental to registration accuracy.

z-stack Registration
++++++++++++++++++++

Expand Down Expand Up @@ -827,7 +833,6 @@ def __compute_correlations(self):
def __save_correlation_matrix(
self, corr_mat, output_file_name, file_name_labels, title=None
):

# Create an image from the correlation values, squares with color corrosponding
# to value, default color map (viridis)
fig, ax = plt.subplots(figsize=(15, 15))
Expand Down