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epiGBS2 release with Bismark and Freebayes

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@FleurGaBru FleurGaBru released this 15 May 14:54

This release includes several major changes:

  • usage of Bismark for mapping and methylation calling
  • usage of Freebayes for SNP calling
  • creation of a report file using multiQC
  • split conda environments
  • compatibility with snakemake 6.1.1