Merge pull request #286 from nipype/rel/0.6.1

REL: 0.6.1

docs/changes.rst

@@ -0,0 +1,106 @@
+Release Notes
+=============
+
+0.6.1
+-----
+
+* Add ``pydra.tasks`` namespace package to enable separate packages of ``Task``\s to be
+  installed into ``pydra.tasks``.
+* Raise error when task or workflow name conflicts with names of attributes, methods, or
+  other tasks already added to workflow
+* Mention ``requirements.txt`` in README
+
+0.6
+---
+
+* removing the tutorial to a `separate repo <https://github.com/nipype/pydra-tutorial>`__
+* adding windows tests to codecov
+* accepting ``None`` as a valid output from a ``FunctionTask``, also for function that returns multiple values
+* fixing slurm error files
+* adding ``wf._connection`` to ``checksum``
+* allowing for updates of ``wf._connections``
+* editing output, so it works with ``numpy.arrays``
+* removing ``to_job`` and pickling task instead (workers read the tasks and set the proper input, so the multile copies of the input are not kept in the memory)
+* adding standalone function ``load_and_run`` that can load and run a task from a pickle file
+* removing ``create_pyscript`` and simplifying the slurm worker
+* improving error reports in errors flies
+* fixing ``make_class`` so the ``Output`` is properly formatted
+
+0.5
+---
+
+* fixing ``hash_dir`` function
+* adding ``get_available_cpus`` to get the number of CPUs available to the current process or available on the system
+* adding simple implementation for ``BoshTask`` that uses boutiques descriptor
+* adding azure to CI
+* fixing code for windows
+* etelementry updates
+* adding more verbose output for task ``result`` - returns values or indices for input fields
+* adding an experimental implementation of Dask Worker (limited testing with ci)
+
+0.4
+---
+
+* reorganization of the ``State`` class, fixing small issues with the class
+* fixing some paths issues on windows os
+* adding osx and window sto the travis runs (right now allowing for failures for windows)
+* adding ``PydraStateError`` for exception in the ``State`` class
+* small fixes to the hashing functions, adding more tests
+* adding ``hash_dir`` to calculate hash for ``Directory`` type
+
+0.3.1
+-----
+
+* passing ``wf.cache_locations`` to the task
+* using ``rerun`` from submitter to all task
+* adding ``test_rerun`` and ``propagate_rerun`` for workflows
+* fixing task with a full combiner
+* adding ``cont_dim`` to specify dimensionality of the input variables (how much the input is nested)
+
+0.3
+---
+
+* adding sphinx documentation
+* moving from ``dataclasses`` to ``attrs``
+* adding ``container`` flag to the ``ShellCommandTask``
+* fixing ``cmdline``, ``command_args`` and ``container_args`` for tasks with states
+* adding ``CONTRIBUTING.md``
+* fixing hash calculations for inputs with a list of files
+* using ``attr.NOTHING`` for input that is not set
+
+0.2.2
+-----
+
+* supporting tuple as a single element of an input
+
+0.2.1
+-----
+
+* fixing: nodes with states and input fields (from splitter) that are empty were failing
+
+0.2
+---
+
+* big changes in ``ShellTask``, ``DockerTask`` and ``SingularityTask``
+    * customized input specification and output specification for ``Task``\s
+    * adding singularity checks to Travis CI
+    * binding all input files to the container
+* changes in ``Workflow``
+    * passing all outputs to the next node: ``lzout.all_``
+    * fixing inner splitter
+* allowing for ``splitter`` and ``combiner`` updates
+* adding ``etelementry`` support
+
+0.1
+---
+
+* Core dataflow creation and management API
+* Distributed workers:
+    * concurrent futures
+    * SLURM
+* Notebooks for Pydra concepts
+
+0.0.1
+-----
+
+Initial Pydra Dataflow Engine release.

docs/index.rst

@@ -10,6 +10,7 @@ Welcome to Pydra: A simple dataflow engine with scalable semantics's documentati
    :maxdepth: 2
    :caption: Contents:
 
+   changes
    api