feat: using iupac codes and elaborate penalties for silva dataset

nishaq503 · Nov 13, 2023 · 2e759c9 · 2e759c9
1 parent b0753c3
commit 2e759c9
Show file tree

Hide file tree

Showing 7 changed files with 536 additions and 113 deletions.
diff --git a/abd-clam/src/cakes/knn/mod.rs b/abd-clam/src/cakes/knn/mod.rs
@@ -162,10 +162,10 @@ impl Algorithm {
         }
     }
 
-    /// Returns a list of all the algorithms, excluding Linear.
+    /// Returns a list of all the algorithms, excluding `Linear` and `RepeatedRnn`.
     #[must_use]
     pub const fn variants<'a>() -> &'a [Self] {
-        &[Self::RepeatedRnn, Self::GreedySieve, Self::Sieve, Self::SieveSepCenter]
+        &[Self::GreedySieve, Self::Sieve, Self::SieveSepCenter]
     }
 }
 

diff --git a/cakes-results/Cargo.toml b/cakes-results/Cargo.toml
@@ -22,6 +22,7 @@ env_logger = "0.10.0"
 num-format = "0.4.4"
 csv = "1.2.2"
 rand = "0.8.5"
+rayon = "1.8.0"
 
 [[bin]]
 name = "knn-results"