Adjusted extract_reads_id for new subworkflow

nrhorner · Sep 10, 2023 · c863626 · c863626
1 parent b13f956
commit c863626
Showing 1 changed file with 4 additions and 5 deletions.
diff --git a/modules/local/extract_reads.nf → modules/local/extract_reads_id/main.nf b/modules/local/extract_reads.nf → modules/local/extract_reads_id/main.nf
@@ -1,15 +1,14 @@
-process EXTRACT_READ_IDS {
+process SAMTOOLS_EXTRACT_READ_IDS {
     tag "$meta.id"
-    label 'process_low'
+    label 'process_single'
 
-    conda (params.enable_conda ? "bioconda::samtools=1.15.1" : null)
+    conda "bioconda::samtools=1.15.1"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/samtools:1.15.1--h1170115_0' :
         'quay.io/biocontainers/samtools:1.15.1--h1170115_0' }"
 
     input:
-    tuple val(meta), path(input), path(index)
-    tuple val(meta), path(bed)
+    tuple val(meta), path(input), path(index), path(bed)
 
     output:
     tuple val(meta), path("*_IDs_all.txt") , emit: read_ids