Merge pull request nf-core#9 from nf-core/run_alignment_only

Run alignment only and updated modules.
nrhorner · Jul 27, 2023 · e7b43bb · e7b43bb
2 parents cff1f1a + d49e66d
commit e7b43bb
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diff --git a/modules/nf-core/modules/gatk4/markduplicates/main.nf b/modules/nf-core/modules/gatk4/markduplicates/main.nf
diff --git a/modules/nf-core/modules/gatk4/markduplicates/meta.yml b/modules/nf-core/modules/gatk4/markduplicates/meta.yml
diff --git a/modules/nf-core/modules/mosdepth/main.nf b/modules/nf-core/modules/mosdepth/main.nf
diff --git a/modules/nf-core/modules/mosdepth/meta.yml b/modules/nf-core/modules/mosdepth/meta.yml
diff --git a/modules/nf-core/modules/samtools/bam2fq/main.nf b/modules/nf-core/modules/samtools/bam2fq/main.nf
diff --git a/modules/nf-core/modules/samtools/bam2fq/meta.yml b/modules/nf-core/modules/samtools/bam2fq/meta.yml
diff --git a/modules/nf-core/modules/samtools/collatefastq/main.nf b/modules/nf-core/modules/samtools/collatefastq/main.nf
diff --git a/modules/nf-core/modules/samtools/collatefastq/meta.yml b/modules/nf-core/modules/samtools/collatefastq/meta.yml