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[MODIF] update modules
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@nservant
nservant committed Jul 18, 2024
1 parent e811df3 commit 8e19d59
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30 changes: 15 additions & 15 deletions modules.json
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Original file line number Diff line number Diff line change
Expand Up @@ -7,7 +7,7 @@
"nf-core": {
"bowtie2/align": {
"branch": "master",
"git_sha": "3c77ca9aac783e76c3614a06db3bfe4fef619bde",
"git_sha": "e4bad511789f16d0df39ee306b2cd50418365048",
"installed_by": ["modules"]
},
"bowtie2/build": {
Expand All @@ -17,12 +17,12 @@
},
"bwa/index": {
"branch": "master",
"git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
"git_sha": "e0ff65e1fb313677de09f5f477ae3da30ce19b7b",
"installed_by": ["modules"]
},
"bwa/mem": {
"branch": "master",
"git_sha": "a64788f5ad388f1d2ac5bd5f1f3f8fc81476148c",
"git_sha": "e0ff65e1fb313677de09f5f477ae3da30ce19b7b",
"installed_by": ["modules"]
},
"calder2": {
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},
"custom/getchromsizes": {
"branch": "master",
"git_sha": "1b0ffa4e5aed5b7e3cd4311af31bd3b2c8345051",
"git_sha": "1ceaa8ba4d0fd886dbca0e545815d905b7407de7",
"installed_by": ["modules"]
},
"fastqc": {
Expand All @@ -67,7 +67,7 @@
},
"multiqc": {
"branch": "master",
"git_sha": "b7ebe95761cd389603f9cc0e0dc384c0f663815a",
"git_sha": "b80f5fd12ff7c43938f424dd76392a2704fa2396",
"installed_by": ["modules"]
},
"pairix": {
Expand All @@ -77,52 +77,52 @@
},
"pairtools/dedup": {
"branch": "master",
"git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
"git_sha": "4d3743f71f43cc40505dee2bc0747dca2df5f69a",
"installed_by": ["modules"]
},
"pairtools/merge": {
"branch": "master",
"git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
"git_sha": "4d3743f71f43cc40505dee2bc0747dca2df5f69a",
"installed_by": ["modules"]
},
"pairtools/parse": {
"branch": "master",
"git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
"git_sha": "4d3743f71f43cc40505dee2bc0747dca2df5f69a",
"installed_by": ["modules"]
},
"pairtools/restrict": {
"branch": "master",
"git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
"git_sha": "4d3743f71f43cc40505dee2bc0747dca2df5f69a",
"installed_by": ["modules"]
},
"pairtools/select": {
"branch": "master",
"git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
"git_sha": "4d3743f71f43cc40505dee2bc0747dca2df5f69a",
"installed_by": ["modules"]
},
"pairtools/sort": {
"branch": "master",
"git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
"git_sha": "4d3743f71f43cc40505dee2bc0747dca2df5f69a",
"installed_by": ["modules"]
},
"pairtools/stats": {
"branch": "master",
"git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
"git_sha": "4d3743f71f43cc40505dee2bc0747dca2df5f69a",
"installed_by": ["modules"]
},
"samtools/flagstat": {
"branch": "master",
"git_sha": "a64788f5ad388f1d2ac5bd5f1f3f8fc81476148c",
"git_sha": "04fbbc7c43cebc0b95d5b126f6d9fe4effa33519",
"installed_by": ["modules"]
},
"samtools/index": {
"branch": "master",
"git_sha": "a64788f5ad388f1d2ac5bd5f1f3f8fc81476148c",
"git_sha": "04fbbc7c43cebc0b95d5b126f6d9fe4effa33519",
"installed_by": ["modules"]
},
"samtools/sort": {
"branch": "master",
"git_sha": "a64788f5ad388f1d2ac5bd5f1f3f8fc81476148c",
"git_sha": "04fbbc7c43cebc0b95d5b126f6d9fe4effa33519",
"installed_by": ["modules"]
}
}
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28 changes: 23 additions & 5 deletions modules/nf-core/bowtie2/align/main.nf
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43 changes: 34 additions & 9 deletions modules/nf-core/bowtie2/align/meta.yml
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5 changes: 5 additions & 0 deletions modules/nf-core/bowtie2/align/tests/cram_crai.config
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