Repositories list

• CB2

  Public
  Beta-binomial modeling of CRISPR pooled screen data identifies target genes with greater sensitivity and fewer false negatives

  0•0•0•0•Updated Dec 25, 2019Dec 25, 2019

• Python_Introduction_testy_till

  Public
  Jupyter Notebook

  •0•0•0•0•Updated May 28, 2019May 28, 2019

• bioinfor_tutorial_2018

  Public
  Shell

  •7•6•0•0•Updated May 26, 2019May 26, 2019

• fragmatic

  Public
  Simple program for in silico restriction digest of genomic sequences, to simulate RAD-family NGS library prep methods

  Perl

  •

  GNU General Public License v3.0

  •6•0•0•0•Updated May 24, 2019May 24, 2019

• biostat561

  Public
  Course materials for BIOST561

  Shell

  •70•2•0•0•Updated May 23, 2019May 23, 2019

• Python

  Public
  All Algorithms implemented in Python

  Python

  •

  MIT License

  •46k•0•0•0•Updated Apr 29, 2019Apr 29, 2019

• blog_repo

  Public
  0•0•0•0•Updated Apr 26, 2019Apr 26, 2019

• Practical_Bioinformatics_HOWTO

  Public
  Perl

  •1•0•0•0•Updated Apr 25, 2019Apr 25, 2019

• omicsacademy.github.io

  Public
  My Blog / Jekyll Themes / PWA

  CSS

  •

  Apache License 2.0

  •5.8k•0•0•0•Updated Apr 22, 2019Apr 22, 2019

• bioinf2019

  Public
  Perl

  •14•29•0•0•Updated Apr 20, 2019Apr 20, 2019

• autoEDA-resources

  Public
  A list of software and papers related to automatic/fast Exploratory Data Analysis

  HTML

  •78•0•0•0•Updated Apr 19, 2019Apr 19, 2019

• Chicago-RideShare

  Public
  Exploration of Chicago Rideshare Data

  HTML

  •1•0•0•0•Updated Apr 17, 2019Apr 17, 2019

• Zhang2019NBT

  Public
  Scripts for stat and plot figures in rice microbiome paper

  HTML

  •50•0•0•0•Updated Apr 12, 2019Apr 12, 2019

• yscRNASeq_code

  Public
  Java

  •0•0•0•0•Updated Mar 30, 2019Mar 30, 2019

• ggplot_flipbook

  Public
  This is a flipbook that builds up plots with ggplot2.

  HTML

  •32•0•0•0•Updated Mar 11, 2019Mar 11, 2019

• In-depth-NGS-Data-Analysis-Course

  Public
  Materials for 12-day course on analyzing RNA-Seq, ChIP-Seq and variant calling data.

  HTML

  •

  Other

  •269•2•0•0•Updated Feb 28, 2019Feb 28, 2019

• Metabolomics_ML

  Public
  Jupyter Notebook

  •4•0•0•0•Updated Feb 27, 2019Feb 27, 2019

• PracticalPerl4Biology

  Public
  0•0•0•0•Updated Feb 24, 2019Feb 24, 2019

• ceph-dnm-manuscript

  Public
  Code used for figure generation and statistical analysis for https://www.biorxiv.org/content/10.1101/552117v1

  Jupyter Notebook

  •4•0•0•0•Updated Feb 20, 2019Feb 20, 2019

• pca_animation

  Public
  Jupyter Notebook

  •

  MIT License

  •1•0•0•0•Updated Dec 31, 2018Dec 31, 2018

• awesome_bioinformatics

  Public
  Awesome resources on Bioinformatics, data science, machine learning, programming language (Python, Golang, R, Perl) and miscellaneous stuff.

  MIT License

  •170•1•0•0•Updated Dec 14, 2018Dec 14, 2018

• HiC_material

  Public
  0•1•0•0•Updated Dec 8, 2018Dec 8, 2018

• tabula-muris

  Public
  Code and annotations for the Tabula Muris single-cell transcriptomic dataset.

  HTML

  •

  MIT License

  •93•0•0•0•Updated Nov 28, 2018Nov 28, 2018

• citation-gates

  Public
  code to generate passage of citations through animated reproducibility gates

  R

  •6•0•0•0•Updated Nov 20, 2018Nov 20, 2018

• WLMT

  Public
  Python

  •

  GNU General Public License v3.0

  •5•0•0•0•Updated Oct 26, 2018Oct 26, 2018

• giab_data_indexes

  Public
  This repository contains data indexes from NIST's Genome in a Bottle project.

  72•0•0•0•Updated Oct 10, 2018Oct 10, 2018

• bioinformatics-hacks

  Public
  Scripts for miscelleneous bioinformatics tasks

  Python

  •

  Other

  •16•0•0•0•Updated Aug 10, 2018Aug 10, 2018

• samclip

  Public
  Filter SAM file for soft and hard clipped alignments

  Perl

  •

  GNU General Public License v3.0

  •10•0•0•0•Updated Jul 19, 2018Jul 19, 2018

• rpackages

  Public
  R package development - the Leek group way!

  286•0•0•0•Updated Jun 18, 2018Jun 18, 2018

• 2018_data_science_bowl_talk

  Public
  My presentation for the Learn Data Science meetup in Vancouver about 2018 Data Science Bowl on Kaggle, where I finished in the top 2% out of 3634 participants.

  MIT License

  •1•0•0•0•Updated May 20, 2018May 20, 2018