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    16 repositories

    • element-deeplabcut

      Public
      Python
      •
      MIT License
      •38•0•0•0•Updated Jan 26, 2025Jan 26, 2025

    • element-calcium-imaging

      Public
      DataJoint Element for Calcium Imaging - NIH U24
      Python
      •
      MIT License
      •43•0•0•1•Updated Jan 23, 2025Jan 23, 2025

    • scanreader

      Public
      Python TIFF Stack Reader for ScanImage 5 scans (including multiROI).
      Python
      •
      MIT License
      •14•0•0•0•Updated Jan 22, 2025Jan 22, 2025

    • element-interface

      Public
      Common functions for the DataJoint Elements
      Python
      •
      MIT License
      •17•0•0•0•Updated Aug 15, 2024Aug 15, 2024

    • SUPPORT

      Public
      Accurate denoising of voltage imaging data through statistically unbiased prediction, Nature Methods.
      Python
      •
      GNU General Public License v3.0
      •18•0•0•0•Updated Jun 19, 2024Jun 19, 2024

    • suite2p

      Public
      cell detection in calcium imaging recordings
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •246•0•0•1•Updated Apr 19, 2024Apr 19, 2024

    • sequence-memory

      Public
      Code for Liebe et al. "Phase of firing does not reflect temporal order in sequence memory of humans and recurrent neural networks", code by Matthijs Pals (@Matthijspals)
      Jupyter Notebook
      •1•0•0•0•Updated Jan 9, 2024Jan 9, 2024

    • phase-limit-cycle-RNNs

      Public
      Code for "Trained recurrent neural networks develop phase-locked limit cycles in a working memory task" - Matthijs Pals (@Matthijspals) , Jakob Macke and Omri Barak.
      Python
      •3•0•0•0•Updated Jan 5, 2024Jan 5, 2024

    • element-event

      Public
      DataJoint Element for Experiment Event, Trial, & Block Management - NIH U24
      Python
      •
      MIT License
      •18•0•0•0•Updated May 8, 2023May 8, 2023

    • element-session

      Public
      DataJoint Element for Session Management - NIH U24
      Python
      •
      MIT License
      •18•0•0•0•Updated Mar 27, 2023Mar 27, 2023

    • workflow-calcium-imaging

      Public template
      Example DataJoint workflow for multi-photon calcium imaging analysis with CaImAn and Suite2p
      Jupyter Notebook
      •
      MIT License
      •27•0•0•0•Updated Jan 13, 2023Jan 13, 2023

    • PyWaveSurfer

      Public
      PyWaveSurfer is a Python package for reading WaveSurfer data files in Python.
      Python
      •6•0•0•0•Updated Jan 10, 2023Jan 10, 2023

    • element-facemap

      Public
      DataJoint Element for behavioral analysis with Facemap
      Python
      •
      MIT License
      •13•0•0•0•Updated Nov 11, 2022Nov 11, 2022

    • ENCoI

      Public
      A method to Estimate Neuronal Conductances by Impedance measurement.
      MATLAB
      •2•0•0•0•Updated Jan 19, 2022Jan 19, 2022

    • BrainCode

      Public
      Spiking network simulation code.
      computational-neurosciencespiking-neural-networks
      HTML
      •
      MIT License
      •0•0•0•0•Updated Nov 2, 2021Nov 2, 2021

    • pydentate

      Public
      pydentate is a biophysically realistic computational model of the dentate gyrus, a hippocampal brain region associated with memory formation and a computation called pattern separation.
      Python
      •
      MIT License
      •6•0•0•0•Updated Oct 22, 2021Oct 22, 2021