Repositories list

• qupath

  Public
  QuPath - Bioimage analysis & digital pathology (Jonas lab fork)

  Java

  •

  GNU General Public License v3.0

  •286•0•0•0•Updated Jul 25, 2024Jul 25, 2024

• napari

  Public
  napari: a fast, interactive, multi-dimensional image viewer for python

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •428•0•0•0•Updated May 14, 2024May 14, 2024

• broadside-cycif-annotate-unmix

  Public
  Python

  •

  MIT License

  •1•0•0•0•Updated May 4, 2023May 4, 2023

• broadside-cycif-stitch

  Public
  Python

  •

  MIT License

  •1•0•0•0•Updated May 2, 2023May 2, 2023

• pybasic

  Public
  Background and shading correction for microscopy images

  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated May 2, 2023May 2, 2023

• picasso

  Public
  Linear spectral unmixing

  Jupyter Notebook

  •

  MIT License

  •1•2•0•0•Updated Apr 10, 2023Apr 10, 2023

• broadside-stitch

  Public archive
  Python

  •

  MIT License

  •1•1•0•0•Updated Apr 3, 2023Apr 3, 2023

• bmd-perf

  Public
  Simple performance logging

  Python

  •

  MIT License

  •0•0•0•0•Updated Mar 10, 2023Mar 10, 2023

• broadside

  Public
  Image processing pipelines

  Python

  •

  MIT License

  •0•0•0•0•Updated Dec 2, 2022Dec 2, 2022

• napari-raman

  Public
  A simple Raman spectra viewer using napari

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Aug 30, 2022Aug 30, 2022

• jonaslab-cpp

  Public
  Some CellProfiler plugins.

  cellprofilerbioimage-analysis

  Python

  •

  Other

  •0•0•0•0•Updated May 20, 2021May 20, 2021

• antilles

  Public archive
  Wedge-picking in histology images.

  Python

  •

  MIT License

  •0•0•0•0•Updated Jan 27, 2020Jan 27, 2020