Skip to content

@brineylab brineylab

Change the repository type filter

All

    Repositories list

    20 repositories

    • jupyterhub-config

      Public
      Python
      •0•0•0•0•Updated Feb 20, 2025Feb 20, 2025

    • preferential-masking-paper

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Feb 18, 2025Feb 18, 2025

    • abutils

      Public
      Python
      •
      MIT License
      •4•7•0•1•Updated Feb 14, 2025Feb 14, 2025

    • abstar

      Public
      VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.
      Python
      •
      MIT License
      •16•42•5•0•Updated Feb 14, 2025Feb 14, 2025

    • BALM

      Public
      BALM: baseline antiobdy language model
      Python
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Feb 13, 2025Feb 13, 2025

    • scab

      Public
      Python
      •
      MIT License
      •3•4•1•1•Updated Jan 24, 2025Jan 24, 2025

    • deepspeed

      Public
      Python
      •0•0•0•0•Updated Jan 15, 2025Jan 15, 2025

    • antibodydesign

      Public
      Python
      •
      MIT License
      •1•0•0•0•Updated Jan 13, 2025Jan 13, 2025

    • BALM-paper

      Public
      Jupyter Notebook
      •
      MIT License
      •5•17•1•0•Updated Jan 3, 2025Jan 3, 2025

    • simco

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Dec 5, 2024Dec 5, 2024

    • containers

      Public
      Dockerfile
      •2•0•0•0•Updated Dec 3, 2024Dec 3, 2024

    • lasv-gpc-stabilization

      Public
      Code for the Lassa GPC stabilization by Subsampled AF2
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Nov 18, 2024Nov 18, 2024

    • boltz

      Public
      Official repository for the Boltz-1 biomolecular interaction model
      Python
      •
      MIT License
      •213•0•0•0•Updated Nov 17, 2024Nov 17, 2024

    • taq-ligase-structural-ensemble

      Public
      Conformational Ensembles for Taq Ligase and Human DNA Ligase I and III
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Nov 7, 2024Nov 7, 2024

    • BALM-MoE

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Sep 5, 2024Sep 5, 2024

    • manifests

      Public
      A repository for Kustomize manifests
      YAML
      •
      Apache License 2.0
      •916•0•0•0•Updated Jul 3, 2024Jul 3, 2024

    • antiref

      Public
      AntiRef: reference clusters of human antibody sequences
      Jupyter Notebook
      •
      MIT License
      •3•12•2•1•Updated Apr 18, 2024Apr 18, 2024

    • SARS2-repertoire-mining-paper

      Public
      MIT License
      •0•0•0•0•Updated Oct 18, 2023Oct 18, 2023

    • templates

      Public
      MIT License
      •0•0•0•0•Updated Aug 29, 2023Aug 29, 2023

    • grp-paper

      Public
      Code and data used in The Great Repertoire Project
      Jupyter Notebook
      •
      MIT License
      •10•30•4•0•Updated Jun 14, 2021Jun 14, 2021