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    21 repositories

    • vulpescu_2025

      Public
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jan 3, 2025Jan 3, 2025

    • reproduce_brain_wflow

      Public
      R
      •0•0•0•0•Updated Sep 9, 2024Sep 9, 2024

    • trellis

      Public
      Structural variant classes and methods
      R
      •1•4•0•0•Updated Aug 19, 2024Aug 19, 2024

    • delfipro2024

      Public
      R
      •0•0•0•0•Updated Aug 5, 2024Aug 5, 2024

    • delfi3

      Public
      R
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      GNU General Public License v3.0
      •0•2•0•0•Updated Jul 9, 2024Jul 9, 2024

    • cfepigenetics

      Public
      R
      •0•1•0•0•Updated May 10, 2024May 10, 2024

    • artemis2024

      Public
      Roff
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      GNU General Public License v3.0
      •3•8•0•0•Updated Mar 10, 2024Mar 10, 2024

    • reproduce_lucas_wflow

      Public
      R
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      GNU General Public License v3.0
      •20•26•1•0•Updated Mar 5, 2024Mar 5, 2024

    • plasmut

      Public
      R
      •0•0•0•0•Updated Oct 11, 2023Oct 11, 2023

    • gemini_wflow

      Public
      R
      •1•10•3•0•Updated Jun 14, 2023Jun 14, 2023

    • reproduce_liver_final

      Public
      Code to reproduce "Detecting liver cancer using cell-free DNA fragmentomes
      R
      •
      GNU General Public License v3.0
      •2•10•0•0•Updated Nov 18, 2022Nov 18, 2022

    • PlasmaToolsNovaseq.hg19

      Public
      Reference bins and target distribution for Reference 20 on Novaseq
      R
      •1•2•0•0•Updated Sep 7, 2022Sep 7, 2022

    • genie_ras_hallmarks

      Public
      R
      •1•0•0•0•Updated Aug 25, 2022Aug 25, 2022

    • PlasmaToolsHiseq.hg19

      Public
      Reference bins and target distribution for Reference 54 and Reference 20 on Hiseq
      R
      •1•1•0•0•Updated Aug 4, 2021Aug 4, 2021

    • delfi_scripts

      Public
      R
      •43•71•4•0•Updated Jun 4, 2021Jun 4, 2021

    • svfilters.hg38

      Public
      R
      •0•0•0•0•Updated Apr 4, 2021Apr 4, 2021

    • deconvolution

      Public
      Understanding plasma as a mixture of buffy, normal, and tumor
      HTML
      •0•0•0•0•Updated Jul 1, 2020Jul 1, 2020

    • svplots

      Public
      plotting utilities for sv* packages
      R
      •0•3•0•0•Updated Jul 1, 2019Jul 1, 2019

    • gridcnp_analysis

      Public
      R
      •0•0•0•0•Updated Nov 12, 2018Nov 12, 2018

    • svfilters.hg18

      Public
      Genomic filters for hg18 reference genome
      R
      •0•0•0•0•Updated Mar 19, 2018Mar 19, 2018

    • svfilters.hg19

      Public
      R
      •0•0•0•0•Updated Mar 19, 2018Mar 19, 2018