Repositories list

• deepTools

  Public
  Tools to process and analyze deep sequencing data.

  bioinformaticsrna-seqgenomics+ 3ngschip-seqpython

  Python

  •

  Other

  •215•697•139•12•Updated Feb 17, 2025Feb 17, 2025

• py2bit

  Public
  A python library for accessing 2bit files

  bioinformaticstwobit

  C

  •

  MIT License

  •9•17•0•0•Updated Jan 21, 2025Jan 21, 2025

• pyBigWig

  Public
  A python extension for quick access to bigWig and bigBed files

  bigwigbigbedbioinfomatics

  C

  •

  MIT License

  •51•226•11•0•Updated Jan 17, 2025Jan 17, 2025

• HiCExplorer

  Public
  HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.

  bioinformaticsgenomicsgalaxy+ 3hicchromosome-conformation-capturepython

  Python

  •

  GNU General Public License v3.0

  •70•239•135•0•Updated Dec 2, 2024Dec 2, 2024

• pyGenomeTracks

  Public
  python module to plot beautiful and highly customizable genome browser tracks

  Python

  •

  GNU General Public License v3.0

  •117•794•27•7•Updated Jul 10, 2024Jul 10, 2024

• HiCMatrix

  Public
  Python

  •

  GNU General Public License v3.0

  •8•12•0•0•Updated Apr 30, 2024Apr 30, 2024

• github-actions

  Public
  Play around with github actions

  JavaScript

  •

  MIT License

  •1•0•0•12•Updated Aug 16, 2023Aug 16, 2023

• Knight-Ruiz-Matrix-balancing-algorithm

  Public
  C++

  •5•10•5•1•Updated Apr 13, 2021Apr 13, 2021

• HiCBrowser

  Public
  Simple web browser to visualize HiC tracks

  visualizationdockerbioinformatics+ 5browsergenomicsepigeneticshi-chicexplorer

  JavaScript

  •

  GNU General Public License v2.0

  •5•18•6•2•Updated Dec 12, 2019Dec 12, 2019

• hicBuildMatrixCpp

  Public
  C++ implementation of hicBuildMatrix

  C++

  •

  MIT License

  •2•2•0•0•Updated Oct 16, 2019Oct 16, 2019

• docker-hicbrowser

  Public
  Docker container for easy deployment of the HiCBrowser

  Dockerfile

  •

  GNU General Public License v2.0

  •0•0•0•0•Updated Aug 11, 2019Aug 11, 2019

• deeptools_intervals

  Public
  A python library for constructing interval trees with associated exon/annotation information

  bioinformaticsinterval-treegtf+ 1bed

  C

  •

  MIT License

  •2•6•2•0•Updated Aug 7, 2019Aug 7, 2019

• docker-galaxy-hicexplorer

  Public
  Galaxy Docker Image for the HiCExplorer

  HTML

  •

  MIT License

  •3•10•3•0•Updated Mar 3, 2019Mar 3, 2019