Repositories list

• general_purpose_scripts

  Public
  General purpose scripts

  Shell

  •0•1•0•0•Updated Feb 6, 2025Feb 6, 2025

• meta-analysis-burden-pipeline

  Public
  R

  •0•0•0•0•Updated Feb 3, 2025Feb 3, 2025

• technical-questions

  Public
  1•0•0•0•Updated Jan 29, 2025Jan 29, 2025

• cloudgene

  Public
  A framework to build Software As A Service (SaaS) platforms for data analysis pipelines.

  Java

  •

  GNU Affero General Public License v3.0

  •19•0•0•0•Updated Dec 19, 2024Dec 19, 2024

• parallel-single-point-analysis-pipeline

  Public
  Python

  •0•0•0•0•Updated Dec 19, 2024Dec 19, 2024

• single-point-analysis-pipeline

  Public
  Python

  •1•1•0•0•Updated Dec 17, 2024Dec 17, 2024

• imputationserver

  Public
  Helmholtz Munich Imputation Server: A web-based service for imputation that facilitates access to new reference panels and greatly improves user experience and productivity

  Java

  •

  GNU Affero General Public License v3.0

  •44•1•0•0•Updated Nov 23, 2024Nov 23, 2024

• peakplotter

  Public
  A tool to find and annotate signals in next-generation association studies

  Python

  •3•6•2•0•Updated Oct 2, 2024Oct 2, 2024

• man_qq_annotate

  Public
  Creates Manhattan and QQ plots with annotated peaks.

  R

  •1•4•5•0•Updated Sep 30, 2024Sep 30, 2024

• variant_annotation

  Public
  Variant annotation

  Python

  •0•1•0•0•Updated Sep 21, 2024Sep 21, 2024

• Genetics-of-Osteoarthritis-2.0

  Public
  Python

  •0•0•0•0•Updated Jul 10, 2024Jul 10, 2024

• imputationserver-doc

  Public
  Munich Imputation Server documentation using MkDocs

  1•0•0•1•Updated Jun 26, 2024Jun 26, 2024

• VolosSummerSchool

  Public
  Workshop and course materials for the annual Volos Summer School

  Jupyter Notebook

  •1•8•0•0•Updated Jun 1, 2024Jun 1, 2024

• HumanMolecularGenetics_TUM

  Public
  Jupyter Notebook

  •1•3•0•0•Updated Dec 10, 2023Dec 10, 2023

• go2-viz

  Public
  visualisation scripts

  1•0•0•0•Updated Nov 21, 2023Nov 21, 2023

• T2D_SCZ

  Public
  This repository contains a collection of scripts that were used to run post-GWAS, causal inference and pathway analyses for a genetic study on the type 2 diabetes and schizophrenia comorbidity. For any questions or running instructions, please contact [email protected].

  R

  •0•5•0•0•Updated Oct 18, 2023Oct 18, 2023

• slurm-workshop

  Public
  A repository for with material for SLURM workshop. The workshop is a basic introduction to SLURM

  Shell

  •0•0•0•0•Updated Jul 17, 2023Jul 17, 2023

• gene-annotation-pipeline

  Public
  A pipeline for querying of gene information from different databases and developing a comprehensive report

  0•0•0•0•Updated Jul 11, 2023Jul 11, 2023

• formatting-scripts

  Public
  Scripts for formatting different targets

  Python

  •1•0•0•0•Updated May 26, 2023May 26, 2023

• gk

  Public
  0•0•0•0•Updated Mar 21, 2023Mar 21, 2023

• T2D_OA

  Public
  R

  •0•2•0•0•Updated Jan 11, 2023Jan 11, 2023

• traps

  Public
  TRans-Ancestry PRS Simulator

  R

  •0•0•0•0•Updated Dec 13, 2022Dec 13, 2022

• genotype-array-qc

  Public
  Genotype array quality control scripts

  0•0•0•0•Updated Jul 12, 2022Jul 12, 2022

• mybinder-TUM

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Jun 29, 2022Jun 29, 2022

• fast.coloc

  Public
  R

  •0•1•0•0•Updated Jun 2, 2022Jun 2, 2022

• AFpredictoR

  Public
  R

  •0•0•0•0•Updated May 10, 2022May 10, 2022

• plotburden

  Public
  Interactive tool to visualise burdens of rare variants

  HTML

  •1•5•1•0•Updated Apr 1, 2022Apr 1, 2022

• burden_testing

  Public
  A collection of scripts to run variant aggregation tests from whole-genome sequencing data.

  Shell

  •4•7•2•0•Updated Dec 1, 2021Dec 1, 2021

• binder

  Public
  Jupyter Notebook

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Nov 23, 2021Nov 23, 2021

• itg-snippets

  Public
  Small scripts for small tasks.

  Shell

  •0•0•0•0•Updated Oct 15, 2021Oct 15, 2021