Repositories list

• VInSMoC

  Public
  0•0•0•0•Updated Aug 30, 2024Aug 30, 2024

• Seq2PKS

  Public
  0•2•1•0•Updated May 30, 2024May 30, 2024

• Seq2Saccharide

  Public
  1•0•0•0•Updated Apr 5, 2024Apr 5, 2024

• MASSTplus

  Public
  C++

  •7•9•0•0•Updated Jan 26, 2024Jan 26, 2024

• seq2ripp

  Public
  Predict RiPP structures from genome sequence

  0•3•1•0•Updated May 17, 2023May 17, 2023

• NRPminer

  Public
  Discover non-ribosomal peptide by integrating genomic and mass spectral data

  0•5•2•0•Updated Apr 12, 2023Apr 12, 2023

• MS2Planner

  Public
  Optimizing Coverage in Tandem Mass Spectrometry based Metabolomics by Iterative Data Acquisition

  Python

  •1•6•0•1•Updated Mar 29, 2023Mar 29, 2023

• DistributionSensitiveBucketing

  Public
  Distribution Sensitive Bucketing (DSB) release code.

  C++

  •2•2•0•0•Updated Jan 24, 2023Jan 24, 2023

• TransDiscovery

  Public
  Python

  •0•1•0•0•Updated Jan 19, 2022Jan 19, 2022

• molDiscovery

  Public
  5•15•5•0•Updated Oct 4, 2021Oct 4, 2021

• MetaMiner

  Public
  a metabologenomic pipeline integrating metabolomic and genomic data to identify novel RiPPs and their BGCs

  Other

  •2•12•0•0•Updated Oct 4, 2021Oct 4, 2021

• AssociationNetworks

  Public
  Python

  •3•9•0•0•Updated Sep 21, 2021Sep 21, 2021

• AdenPredictor

  Public
  adenylation domain specificity prediction

  0•0•0•0•Updated Jun 24, 2021Jun 24, 2021

• MetSummarizer

  Public
  Contains 3 notebooks. Each notebook corresponds to a section in the paper. There is one notebook showing how increasing the amount of data increases test performance. Another notebook generates a confusion matrix for disease prediction. The last notebook does a food decomposition of approximately 1500 complex foods.

  Jupyter Notebook

  •0•0•0•0•Updated Mar 24, 2021Mar 24, 2021

• ForestDSH

  Public
  C++

  •0•0•0•0•Updated Apr 30, 2020Apr 30, 2020

• TreeDSH

  Public
  Python

  •0•1•0•0•Updated Jun 7, 2019Jun 7, 2019