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@naef-lab Computational Systems Biology Lab - Naef Lab

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    17 repositories

    • ChIP_atlas

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Jan 16, 2025Jan 16, 2025

    • BIO-411_2425

      Public
      Exercises of Bio-411 Course, 2024-2025
      Jupyter Notebook
      •1•0•0•0•Updated Dec 2, 2024Dec 2, 2024

    • LiverZonation

      Public
      MLE method for lobular coordinate inference from scRNA-seq
      Jupyter Notebook
      •0•0•0•0•Updated Oct 1, 2024Oct 1, 2024

    • CHIRAL

      Public
      Phase inference from unlabeled "OMICS" data
      R
      •2•8•1•0•Updated Sep 11, 2024Sep 11, 2024

    • dryR

      Public
      Differential RhythmicitY analysis in R is an R package that provides the statistical framework to assess differential rhythmicity of a time series with two and more conditions.
      R
      •5•13•0•0•Updated Feb 22, 2024Feb 22, 2024

    • MultiSensor

      Public
      A Bayesian analysis pipeline for modelling data from multiple wearable biosensors
      Jupyter Notebook
      •
      Apache License 2.0
      •2•3•0•0•Updated Jul 27, 2023Jul 27, 2023

    • CZViz

      Public
      Python
      •0•0•0•2•Updated May 1, 2023May 1, 2023

    • CircadianSMFISH

      Public
      HTML
      •
      Apache License 2.0
      •1•1•0•0•Updated Jun 25, 2021Jun 25, 2021

    • Circadian-zonation

      Public
      Jupyter Notebook
      •3•2•0•1•Updated Jan 22, 2021Jan 22, 2021

    • Python-animations

      Public
      Python
      •1•0•0•0•Updated Nov 16, 2020Nov 16, 2020

    • Cell-cycle-and-circadian-clock-coupling

      Public
      Python
      •0•0•0•0•Updated Nov 16, 2020Nov 16, 2020

    • lmeAddSigma

      Public
      Play with lme4 package.
      HTML
      •0•0•0•0•Updated Sep 15, 2018Sep 15, 2018

    • CyclicGO

      Public
      GO analysis around the clock
      R
      •1•0•0•0•Updated Aug 14, 2018Aug 14, 2018

    • f24

      Public
      Test a vector of values for rhythmicity
      R
      •1•1•0•0•Updated Aug 14, 2018Aug 14, 2018

    • BiomartFunctions

      Public
      R
      •1•0•0•0•Updated Aug 16, 2017Aug 16, 2017

    • trackhub

      Public
      create, manage, and upload track hubs for use in the UCSC genome browser
      Python
      •
      MIT License
      •20•0•0•0•Updated Mar 13, 2015Mar 13, 2015

    • PhaseHSV

      Public
      Convert phase to HSV colors
      R
      •1•0•0•0•Updated Nov 12, 2014Nov 12, 2014