Steinegger Lab

All

28 repositories

Metabuli
Public
Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.
bioinformatics taxonomy metagenomics k-mer taxonomic-classification
C++
•
GNU General Public License v3.0
•10•127•16•0•Updated Jan 26, 2025Jan 26, 2025
foldmason
Public
Multiple Protein Structure Alignment at Scale with FoldMason
bioinformatics protein-structure msa
C
•
GNU General Public License v3.0
•14•149•10•0•Updated Jan 26, 2025Jan 26, 2025
folddisco
Public
Fast indexing and search of discontinuous motifs in protein structures
bioinformatics protein-structure motif foldseek
Rust
•
GNU General Public License v3.0
•2•18•5•0•Updated Jan 24, 2025Jan 24, 2025
Metabuli-App
Public
HTML
•
GNU General Public License v3.0
•2•23•0•0•Updated Jan 23, 2025Jan 23, 2025
foldmason-analysis
Public
R
•0•1•0•0•Updated Jan 22, 2025Jan 22, 2025
unicore
Public
Universal and efficient core gene phylogeny with Foldseek and ProstT5
Rust
•
GNU General Public License v3.0
•3•46•2•0•Updated Jan 21, 2025Jan 21, 2025
foldseek
Public
Foldseek enables fast and sensitive comparisons of large structure sets.
clustering protein-structure alignments bioinformatics
C
•
GNU General Public License v3.0
•105•873•91•3•Updated Jan 20, 2025Jan 20, 2025
Metabuli-regression
Public
Regression tests for Metabuli
Shell
•
GNU General Public License v3.0
•0•0•0•0•Updated Jan 17, 2025Jan 17, 2025
foldseek-regression
Public
Regression test for foldseek
Shell
•2•3•0•0•Updated Jan 13, 2025Jan 13, 2025
bfvd-analysis
Public
Big Fantastic Virus Database (BFVD): Code used for analyses
Shell
•0•1•0•0•Updated Dec 16, 2024Dec 16, 2024
alphafold
Public
Open source code for AlphaFold.
Python
•
Apache License 2.0
•2.3k•11•0•2•Updated Dec 4, 2024Dec 4, 2024
afdb-clusters-web
Public
Jupyter Notebook
•
GNU General Public License v3.0
•2•2•1•0•Updated Dec 4, 2024Dec 4, 2024
SeekRank
Public
Rank homologous protein sequences based on a regressor trained on experimental measures
Jupyter Notebook
•
MIT License
•1•7•0•0•Updated Dec 3, 2024Dec 3, 2024
mmseqs2-gpu-analysis
Public
Shell
•
MIT License
•0•9•0•0•Updated Nov 16, 2024Nov 16, 2024
foldseek-multimer-analysis
Public
Shell
•1•2•0•0•Updated Oct 31, 2024Oct 31, 2024
colabfold-protocol
Public
ColabFold protocol
Jupyter Notebook
•8•48•2•0•Updated Oct 17, 2024Oct 17, 2024
ufcg
Public
UFCG: Universal Fungal Core Genes
genomics phylogenetics fungi marker-gene-analysis bioinformatics
Java
•
GNU General Public License v3.0
•0•32•16•0•Updated Oct 16, 2024Oct 16, 2024
foldcomp
Public
Compressing protein structures effectively with torsion angles
bioinformatics protein-structure compression
C++
•
GNU General Public License v3.0
•14•164•25•0•Updated Aug 9, 2024Aug 9, 2024
ufcg-web
Public
UFCG website
HTML
•
GNU General Public License v3.0
•0•1•0•0•Updated Jul 2, 2024Jul 2, 2024
foldseek-analysis
Public
Scripts to benchmark and train foldseek
Jupyter Notebook
•4•33•7•1•Updated May 22, 2024May 22, 2024
petasearch
Public
🧬 Efficient parallelized peta-scale protein database search
C
•
GNU General Public License v3.0
•0•42•5•0•Updated Jan 4, 2024Jan 4, 2024
petasearch-regression
Public
C++
•0•0•0•0•Updated Jan 4, 2024Jan 4, 2024
afdb-clusters-analysis
Public
Scripts to generate and analyze afdb clusters
Jupyter Notebook
•0•11•1•0•Updated Sep 15, 2023Sep 15, 2023
Metabuli-temp
Public archive
Taxonomical classifier using AD k-mer
C++
•
GNU General Public License v3.0
•10•1•0•0•Updated May 30, 2023May 30, 2023
foldcomp-analysis
Public
C
•
GNU General Public License v3.0
•0•3•0•0•Updated Feb 20, 2023Feb 20, 2023
conterminator
Public
Detection of incorrectly labeled sequences across kingdoms
C
•
GNU General Public License v3.0
•7•81•15•1•Updated Oct 25, 2022Oct 25, 2022
probeit
Public
Design capture probes
Python
•
GNU General Public License v3.0
•2•9•0•0•Updated Apr 26, 2022Apr 26, 2022
steineggerlab.github.io
Public
Steinegger Lab page
HTML
•0•0•0•0•Updated Mar 12, 2020Mar 12, 2020