fix CRISPR parser #299

The assumed minimal length of CRISPR spacers was reduced from at least 10 down to at least 1 in the regex.
oschwengers · Jul 16, 2024 · eef3db8 · eef3db8
1 parent 560f926
commit eef3db8
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/bakta/features/crispr.py b/bakta/features/crispr.py
@@ -11,7 +11,7 @@
 import bakta.utils as bu
 
 
-RE_CRISPR = re.compile(r'(\d{1,8})\s+(\d{2})\s+(\d{1,3}\.\d)\s+(?:(\d{2})\s+)?([ATGCN]+)?\s+([ATGCN\.-]+)\s*(?:([ATGCN]+))?')
+RE_CRISPR = re.compile(r'(\d{1,8})\s+(\d{2})\s+(\d{1,3}\.\d)\s+(?:(\d{1})\s+)?([ATGCN]+)?\s+([ATGCN\.-]+)\s*(?:([ATGCN]+))?')
 
 
 log = logging.getLogger('CRISPR')