test a different pair

phbradley · May 4, 2017 · 0212e6a · 0212e6a
1 parent bb20466
commit 0212e6a
Showing 1 changed file with 6 additions and 2 deletions.
diff --git a/DistanceCalculator.py b/DistanceCalculator.py
@@ -43,6 +43,10 @@ def distance( self, tcr1, tcr2, chains='AB' ):
 TRBV19*01,TRBV19*02 CASSIEGSGANVLTF
 TRBV7-8*01 CASSSSGGMNIQYF""".split('\n')
 
+
+    lines = """TRBV6-1*01 CASSEAPLLGGNEQYF
+TRBV29-1*01 CSVEARLF""".split('\n')
+
     organism = 'human'
 
     tcrs = []
@@ -61,6 +65,6 @@ def distance( self, tcr1, tcr2, chains='AB' ):
         for j,t2 in enumerate(tcrs):
             if j<=i:continue
             dist = calculator.distance( t1, t2, chains = 'B' )
-            if dist<100:
-                print t1.vb_reps, t1.cdr3b, t2.vb_reps, t2.cdr3b, dist
+            print t1.vb_reps, t1.cdr3b, t2.vb_reps, t2.cdr3b, dist
+            #if dist<100: