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Gerry data #1198

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Antonialock opened this issue Mar 29, 2019 · 5 comments
Closed

Gerry data #1198

Antonialock opened this issue Mar 29, 2019 · 5 comments

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@Antonialock
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Antonialock commented Mar 29, 2019

Gerry Smith lab
DSBs in wt and various mutants
Rec protein binding in wt and some mutants.
Fowler et al., Mol Cell 2013, Figures 3 and 6;
Fowler et al., Genome Res 2014, Figures 1B and D, 3B, S1D and E

moved to #1441

"3C" type of analysis, showing physical clustering of meiotic DSB hotspots by ligation, immunoprecipitation, and deep sequencing
Fowler et al., PNAS 2018 (Figure 4B and C, and S7A and B)
(this should probably move to a page where we collect 3C data).
PMID: 30217891
(https://github.com/pombase/website/files/3371680/Fowler.et.al.PNAS.2018.complete.pdf)

moced to #1479

Rec12-oligo data on on GSE49977 (a GEO account).

RT ticket number 6827

@ValWood
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ValWood commented Aug 10, 2020

Was anything done here yet?
If not I will put in the queue ticket

@Antonialock
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yes Gerry and I sorted all metadata from their browser-suitable publications. He was going to try to get tracks from Kyle. I guess he was unsuccessful.

@ValWood
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ValWood commented Aug 11, 2020

I will e-mail Kyle.

Where is the meta-data?

@ValWood
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ValWood commented Dec 15, 2020

Closing. I think there are still some to host but Kyle said he would work through them when he has chance.

@ValWood ValWood closed this as completed Dec 15, 2020
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