Automated doc build for refs/heads/main

popsim-consortium · Dec 24, 2024 · f2f086c · f2f086c
1 parent 96e3ead
commit f2f086c
Show file tree

Hide file tree

Showing 13 changed files with 11 additions and 3 deletions.
diff --git a/main/_images/sec_catalog_anapla_models_mallardblackduck_2l19.png b/main/_images/sec_catalog_anapla_models_mallardblackduck_2l19.png
diff --git a/main/_images/sec_catalog_homsap_models_americanadmixture_4b18.png b/main/_images/sec_catalog_homsap_models_americanadmixture_4b18.png
diff --git a/main/_images/sec_catalog_homsap_models_outofafrica_2t12.png b/main/_images/sec_catalog_homsap_models_outofafrica_2t12.png
diff --git a/main/_images/sec_catalog_homsap_models_outofafrica_3g09.png b/main/_images/sec_catalog_homsap_models_outofafrica_3g09.png
diff --git a/main/_images/sec_catalog_homsap_models_outofafrica_4j17.png b/main/_images/sec_catalog_homsap_models_outofafrica_4j17.png
diff --git a/main/_images/sec_catalog_homsap_models_outofafricaarchaicadmixture_5r19.png b/main/_images/sec_catalog_homsap_models_outofafricaarchaicadmixture_5r19.png
diff --git a/.../sec_catalog_homsap_models_outofafricaextendedneandertaladmixturepulse_3i21.png b/.../sec_catalog_homsap_models_outofafricaextendedneandertaladmixturepulse_3i21.png
diff --git a/main/_images/sec_catalog_homsap_models_papuansoutofafrica_10j19.png b/main/_images/sec_catalog_homsap_models_papuansoutofafrica_10j19.png
diff --git a/main/_images/sec_catalog_orysat_models_bottleneckmigration_3c07.png b/main/_images/sec_catalog_orysat_models_bottleneckmigration_3c07.png
diff --git a/main/_images/sec_catalog_pantro_models_bonoboghost_4k19.png b/main/_images/sec_catalog_pantro_models_bonoboghost_4k19.png
diff --git a/main/_images/sec_catalog_ponabe_models_twospecies_2l11.png b/main/_images/sec_catalog_ponabe_models_twospecies_2l11.png
diff --git a/main/changelogs.html b/main/changelogs.html
@@ -136,12 +136,20 @@ <h2>[0.2.1a] - 2024-07-06<a class="headerlink" href="#a-2024-07-06" title="Perma
 <p><strong>New features</strong>:</p>
 <ul class="simple">
 <li><dl class="simple">
-<dt><em>Relationship between dominance and selection coefficient:</em></dt><dd><p>Added the <cite>dominance_coeff_list</cite> argument to <cite>MutationType</cite>, allowing
+<dt>Relationship between dominance and selection coefficient:</dt><dd><p>Added the <cite>dominance_coeff_list</cite> argument to <cite>MutationType</cite>, allowing
 for DFEs with a discretized relationship between h and s.
 (<a class="reference external" href="https://github.com/petrelharp">&#64;petrelharp</a>, <a class="reference external" href="https://github.com/popsim-consortium/stdpopsim/pull/1498">#1498</a>)</p>
 </dd>
 </dl>
 </li>
+<li><dl class="simple">
+<dt>Model specific recombination rates:</dt><dd><p>Added the <cite>recombination_rate</cite> attribute to demographic model,
+allowing for model specific recombination rates in addition to
+the species default rates.
+(<a class="reference external" href="https://github.com/gregorgorjanc">&#64;gregorgorjanc</a>, <a class="reference external" href="https://github.com/popsim-consortium/stdpopsim/pull/1591">#1591</a>)</p>
+</dd>
+</dl>
+</li>
 </ul>
 <p><strong>New species</strong>:</p>
 <ul class="simple">
@@ -238,7 +246,7 @@ <h2>[0.2.0] - 2022-11-01<a class="headerlink" href="#id1" title="Permalink to th
 QC’d by <a class="reference external" href="https://github.com/igronau">&#64;igronau</a>, <a class="reference external" href="https://github.com/popsim-consortium/stdpopsim/pull/1021">#1021</a>.</p></li>
 <li><p>AnoGam/GabonAg1000G_1A17 (<a class="reference external" href="https://github.com/andrewkern">&#64;andrewkern</a>, <a class="reference external" href="https://github.com/popsim-consortium/stdpopsim/pull/856">#856</a>).
 QC’d by <a class="reference external" href="https://github.com/petrelharp">&#64;petrelharp</a>, <a class="reference external" href="https://github.com/popsim-consortium/stdpopsim/pull/1279">#1279</a>.</p></li>
-<li><p>BosTau/HolsteinFriesian_1M13 (<a class="reference external" href="https://github.com/grahamgower">&#64;grahamgower</a>, <a class="reference external" href="https://github.com/popsim-consortium/stdpopsim/pull/600">#600</a>).
+<li><p>BosTau/HolsteinFriesian_1M13 (<a class="reference external" href="https://github.com/grahamgower">&#64;grahamgower</a> and <a class="reference external" href="https://github.com/iechevarriaz">&#64;iechevarriaz</a>, <a class="reference external" href="https://github.com/popsim-consortium/stdpopsim/pull/558">#558</a> and <a class="reference external" href="https://github.com/popsim-consortium/stdpopsim/pull/600">#600</a>).
 QC’d by <a class="reference external" href="https://github.com/igronau">&#64;igronau</a>, <a class="reference external" href="https://github.com/popsim-consortium/stdpopsim/pull/1272">#1272</a>.</p></li>
 <li><p>HomSap/OutOfAfricaExtendedNeandertalAdmixturePulse_3I21
 (<a class="reference external" href="https://github.com/leonardolasi">&#64;leonardolasi</a>, <a class="reference external" href="https://github.com/popsim-consortium/stdpopsim/pull/1066">#1066</a>).

diff --git a/main/searchindex.js b/main/searchindex.js