Merge branch 'develop' into unique-micro-sims

examples/README.md

@@ -1,18 +1,25 @@
 # Solverdummies
 
-The `solverdummies` are minimal working examples for using the preCICE Micro Manager with different languages. At the moment, there are examples for Python, and C++. They can be coupled with any other solver, for example the `macro-dummy.py` in this directory.
+The `solverdummies` are minimal working examples for using the preCICE Micro Manager with different languages. At the moment, there are examples for Python, and C++. They can be coupled with any other solver, for example the `macro_dummy.py` in this directory.
 
 ## Python
 
 To run the Python solverdummies, run the following commands in the `examples/` directory in **two different terminals**:
 
 ```bash
-python macro-dummy.py
-python python-dummy/run_micro_manager.py
+python macro_dummy.py
+python python-dummy/run_micro_manager.py --config micro-manager-config.json
 ```
 
 Note that running `micro_manager micro-manager-config.json` from the terminal will not work, as the path in the configuration file is relative to the current working directory. See [#36](https://github.com/precice/micro-manager/issues/36) for more information.
 
+To run the Python solverdummies with adaptivity run the following commands in the `examples/` directory in **two different terminals**:
+
+```bash
+python macro_dummy.py
+python python-dummy/run_micro_manager.py --config micro-manager-adaptivity-config.json
+```
+
 ## C++
 
 The C++ solverdummies have to be compiled first using [`pybind11`](https://pybind11.readthedocs.io/en/stable/index.html). To do so, install `pybind11` using `pip`:
@@ -42,7 +49,14 @@ Then, run the following commands in the `examples/` directory, in **two differen
 
 ```bash
 python macro_dummy.py
-python cpp-dummy/run_micro_manager.py
+python cpp-dummy/run_micro_manager.py --config micro-manager-config.json
+```
+
+To run the C++ solverdummies with adaptivity run the following commands in the `examples/` directory in **two different terminals**:
+
+```bash
+python macro_dummy.py
+python cpp-dummy/run_micro_manager.py --config micro-manager-adaptivity-config.json
 ```
 
 When changing the C++ solverdummy to your own solver, make sure to change the `PYBIND11_MODULE` in `micro_cpp_dummy.cpp` to the name that you want to compile to.

micro_manager/micro_manager.py

@@ -149,6 +149,8 @@ def initialize(self) -> None:
 
         self._mesh_vertex_ids, mesh_vertex_coords = self._participant.get_mesh_vertex_ids_and_coordinates(
             self._macro_mesh_name)
+        assert (mesh_vertex_coords.size != 0), "Macro mesh has no vertices."
+
         self._local_number_of_sims, _ = mesh_vertex_coords.shape
         self._logger.info("Number of local micro simulations = {}".format(self._local_number_of_sims))