Use same ValidationParam as parsed one and define a default pepSetSco…

…ring if none is specified (MASCOT_STANDARD_SCORE)
profiproteomics · Jun 22, 2021 · 0fb0ac0 · 0fb0ac0
1 parent c2f0ff2
commit 0fb0ac0
Showing 1 changed file with 1 addition and 6 deletions.
diff --git a/...ne-cortex/src/main/scala/fr/proline/cortex/service/dps/msi/ImportValidateGenerateSM.scala b/...ne-cortex/src/main/scala/fr/proline/cortex/service/dps/msi/ImportValidateGenerateSM.scala
@@ -273,12 +273,7 @@ class ImportValidateGenerateSM extends AbstractRemoteProcessingService with IImp
         val rsValidator = ResultSetValidator(
           execContext = execCtx,
           targetRs = currentRS,
-          validationConfig = ValidationConfig(
-            pepMatchPreFilters = validationParam.pepMatchPreFilters,
-            pepMatchValidator = validationParam.pepMatchValidator,
-            protSetFilters = validationParam.protSetFilters,
-            protSetValidator = validationParam.protSetValidator,
-            pepSetScoring = Some(validationParam.pepSetScoring.getOrElse(PepSetScoring.MASCOT_STANDARD_SCORE))),
+          validationConfig = validationParam.copy(pepSetScoring= Some(validationParam.pepSetScoring.getOrElse(PepSetScoring.MASCOT_STANDARD_SCORE))),
           inferenceMethod = Some(InferenceMethod.PARSIMONIOUS),
           storeResultSummary = true,
           propagatePepMatchValidation = false,